Gm16569 Pseudogene Detail

Summary

• Symbol
  Gm16569
• Name
  predicted gene 16569

• Feature Type
  pseudogene
• IDs
  MGI:4414989
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:3103434-3104386 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 1.94 cM

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414989	pseudogene	Chr17:3103434-3104386 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040110	pseudogene	Chr17:92431-93711 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039732	pseudogene	Chr16:5446-5885 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039130	pseudogene	Chr6:67116903-67434673 (-)
CBA/J	MGP_CBAJ_G0039699	pseudogene	Chr16:4080-4519 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16569
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7

• Ensembl
  ENSMUSG00000089690 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089690	Ensembl Gene Model | MGI Sequence Detail	953	C57BL/6J
transcript	ENSMUST00000160526	Ensembl | MGI Sequence Detail	314	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;