Gm16588 Pseudogene Detail

Summary

• Symbol
  Gm16588
• Name
  predicted gene 16588

• Feature Type
  pseudogene
• IDs
  MGI:4415008
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:163994148-163994502 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 71.48 cM

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4415008	pseudogene	Chr1:163994148-163994502 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010410	pseudogene	Chr1:162677418-162677776 (+)
AKR/J	MGP_AKRJ_G0010378	pseudogene	Chr1:167614356-167614710 (+)
BALB/cJ	MGP_BALBcJ_G0010385	pseudogene	Chr1:163177681-163178035 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010287	pseudogene	Chr1:181528746-181529097 (+)
DBA/2J	MGP_DBA2J_G0010318	pseudogene	Chr1:161573162-161573526 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010403	pseudogene	Chr1:170663884-170664239 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0010623	pseudogene	Chr1:167447794-167448148 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16588
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm16588
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10

• Ensembl
  ENSMUSG00000089790 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089790	Ensembl Gene Model | MGI Sequence Detail	355	C57BL/6J
transcript	ENSMUST00000162889	Ensembl | MGI Sequence Detail	355	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;