n-R5s25 Gene Detail

Summary

• Symbol
  n-R5s25
• Name
  nuclear encoded rRNA 5S 25

• Feature Type
  rRNA gene
• IDs
  MGI:4421760
  NCBI Gene: 115488945
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:34780453-34780571 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 18.69 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4421760	rRNA gene	Chr18:34780453-34780571 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036626	rRNA gene	Chr18:32871810-32871928 (+)
A/J	MGP_AJ_G0036615	rRNA gene	Chr18:31761438-31761556 (+)
AKR/J	MGP_AKRJ_G0036565	rRNA gene	Chr18:32666953-32667071 (+)
BALB/cJ	MGP_BALBcJ_G0036605	rRNA gene	Chr18:31818741-31818859 (+)
C3H/HeJ	MGP_C3HHeJ_G0036296	rRNA gene	Chr18:32681873-32681991 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037117	rRNA gene	Chr18:34132445-34132563 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034204	rRNA gene	Chr18:31902821-31902939 (+)
CAST/EiJ	MGP_CASTEiJ_G0035482	rRNA gene	Chr18:32632511-32632629 (+)
CBA/J	MGP_CBAJ_G0036269	rRNA gene	Chr18:35068011-35068129 (+)
DBA/2J	MGP_DBA2J_G0036444	rRNA gene	Chr18:31416363-31416481 (+)
FVB/NJ	MGP_FVBNJ_G0036400	rRNA gene	Chr18:31102550-31102668 (+)
LP/J	MGP_LPJ_G0036491	rRNA gene	Chr18:32953735-32953853 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036397	rRNA gene	Chr18:36333257-36333375 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037232	rRNA gene	Chr18:32492454-32492572 (+)
PWK/PhJ	MGP_PWKPhJ_G0035181	rRNA gene	Chr18:31609354-31609551 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034998	rRNA gene	Chr18:32769844-32769952 (+)
WSB/EiJ	MGP_WSBEiJ_G0035685	rRNA gene	Chr18:32413948-32414066 (+)

Homology

• Gene Tree
  n-R5s25
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000064857 (Evidence)
• NCBI Gene
  115488945

Representative Sequences			Length	Strain/Species
genomic	115488945	NCBI Gene Model | MGI Sequence Detail	119	C57BL/6J
transcript	XR_004940049	RefSeq | MGI Sequence Detail	119	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:156847 Gardner PP, et al., Rfam: updates to the RNA families database. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40