n-R5s111 Gene Detail

Summary

• Symbol
  n-R5s111
• Name
  nuclear encoded rRNA 5S 111

• Feature Type
  rRNA gene
• IDs
  MGI:4421959
  NCBI Gene: 100861478
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:124284229-124284347 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 72.10 cM

Strain
Comparison

• SNPs within 2kb
  5 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4421959	rRNA gene	Chr8:124284227-124284347 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  n-R5s111
  

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000119009 (Evidence)
• NCBI Gene
  100861478

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119009	Ensembl Gene Model | MGI Sequence Detail	119	C57BL/6J
transcript	ENSMUST00000240235	Ensembl | MGI Sequence Detail	119	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:156847 Gardner PP, et al., Rfam: updates to the RNA families database. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40