Vmn1r-ps97 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps97
• Name
  vomeronasal 1 receptor, pseudogene 97
• Synonyms
  Gm11287

• Feature Type
  pseudogene
• IDs
  MGI:4439044
  NCBI Gene: 100312527
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:22320594-22321195 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 8.21 cM

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439044	pseudogene	Chr13:22320594-22321196 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040022	pseudogene	Chr13:19469469-19470064 (-)
A/J	MGP_AJ_G0040052	pseudogene	Chr13:20277465-20278062 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040028	pseudogene	Chr13:20269558-20270157 (+)
C3H/HeJ	MGP_C3HHeJ_G0039677	pseudogene	Chr13:20594366-20596894 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0039811	pseudogene	Chr13:18662402-18663004 (-)
FVB/NJ	MGP_FVBNJ_G0039809	pseudogene	Chr13:19486820-19487317 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039795	pseudogene	Chr13:22574957-22577013 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040704	pseudogene	Chr13:20378325-20378963 (+)
PWK/PhJ	MGP_PWKPhJ_G0038441	pseudogene	Chr13:18645831-18646414 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038181	pseudogene	Chr13:19180304-19184108 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn1r-ps97
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn1r-ps97
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000083167 (Evidence)
• NCBI Gene
  100312527

Representative Sequences			Length	Strain/Species
genomic	100312527	NCBI Gene Model | MGI Sequence Detail	602	C57BL/6J

Other
Accession IDs

MGI:3651655

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18