Vmn1r-ps104 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps104
• Name
  vomeronasal 1 receptor, pseudogene 104
• Synonyms
  Gm11302

• Feature Type
  pseudogene
• IDs
  MGI:4439058
  NCBI Gene: 100312535
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:22633811-22634529 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 8.73 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439058	pseudogene	Chr13:22633811-22634610 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040027	pseudogene	Chr13:19777835-19778605 (+)
A/J	MGP_AJ_G0040030	pseudogene	Chr13:19379012-19379782 (+)
AKR/J	MGP_AKRJ_G0039951	pseudogene	Chr13:19671580-19672350 (+)
BALB/cJ	MGP_BALBcJ_G0040006	pseudogene	Chr13:19396266-19397036 (+)
C3H/HeJ	MGP_C3HHeJ_G0039656	pseudogene	Chr13:19737955-19738725 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040591	pseudogene	Chr13:20476608-20477378 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037135	pseudogene	Chr13:18930649-18931619 (+)
CAST/EiJ	MGP_CASTEiJ_G0038762	pseudogene	Chr13:19559464-19560235 (+)
CBA/J	MGP_CBAJ_G0039623	pseudogene	Chr13:21179680-21180450 (+)
DBA/2J	MGP_DBA2J_G0039816	pseudogene	Chr13:18980471-18981241 (+)
FVB/NJ	MGP_FVBNJ_G0039787	pseudogene	Chr13:18610821-18611591 (+)
LP/J	MGP_LPJ_G0039862	pseudogene	Chr13:20004297-20005068 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039773	pseudogene	Chr13:21557976-21558746 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040687	pseudogene	Chr13:19456429-19457200 (+)
PWK/PhJ	MGP_PWKPhJ_G0038450	pseudogene	Chr13:19077239-19078010 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038164	pseudogene	Chr13:18445881-18446650 (+)
WSB/EiJ	MGP_WSBEiJ_G0038989	pseudogene	Chr13:19591289-19592059 (+)

Homology

• Gene Tree
  Vmn1r-ps104
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn1r-ps104
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081283 (Evidence)
• NCBI Gene
  100312535

Representative Sequences			Length	Strain/Species
genomic	100312535	NCBI Gene Model | MGI Sequence Detail	719	C57BL/6J

Other
Accession IDs

MGI:3651400

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18