Vmn1r-ps107 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps107
• Name
  vomeronasal 1 receptor, pseudogene 107
• Synonyms
  Gm11299

• Feature Type
  pseudogene
• IDs
  MGI:4439059
  NCBI Gene: 100312536
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:22675775-22676355 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 8.79 cM

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439059	pseudogene	Chr13:22675774-22676355 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040029	pseudogene	Chr13:19820467-19821047 (+)
A/J	MGP_AJ_G0040032	pseudogene	Chr13:19420951-19421531 (+)
AKR/J	MGP_AKRJ_G0039953	pseudogene	Chr13:19715150-19715730 (+)
BALB/cJ	MGP_BALBcJ_G0040008	pseudogene	Chr13:19440302-19440882 (+)
C3H/HeJ	MGP_C3HHeJ_G0039658	pseudogene	Chr13:19780564-19781144 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040593	pseudogene	Chr13:20518536-20519116 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038764	pseudogene	Chr13:19606617-19607202 (+)
CBA/J	MGP_CBAJ_G0039625	pseudogene	Chr13:21235082-21235662 (+)
DBA/2J	MGP_DBA2J_G0039818	pseudogene	Chr13:19020724-19021304 (+)
FVB/NJ	MGP_FVBNJ_G0039789	pseudogene	Chr13:18650842-18651422 (+)
LP/J	MGP_LPJ_G0039864	pseudogene	Chr13:20046716-20047295 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039775	pseudogene	Chr13:21601815-21602395 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040689	pseudogene	Chr13:19495597-19496176 (+)
PWK/PhJ	MGP_PWKPhJ_G0038452	pseudogene	Chr13:19115514-19116194 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038166	pseudogene	Chr13:18496589-18497175 (+)
WSB/EiJ	MGP_WSBEiJ_G0038991	pseudogene	Chr13:19632270-19632850 (+)

Homology

• Gene Tree
  Vmn1r-ps107
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn1r-ps107
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000080697 (Evidence)
• NCBI Gene
  100312536

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080697	Ensembl Gene Model | MGI Sequence Detail	581	C57BL/6J
transcript	ENSMUST00000121458	Ensembl | MGI Sequence Detail	581	Not Applicable

Other
Accession IDs

MGI:3651397

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18