Vmn1r-ps112 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps112
• Name
  vomeronasal 1 receptor, pseudogene 112
• Synonyms
  Gm11311

• Feature Type
  pseudogene
• IDs
  MGI:4439064
  NCBI Gene: 100312541
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:22917260-22917803 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 9.10 cM

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439064	pseudogene	Chr13:22917170-22918093 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040034	pseudogene	Chr13:20107244-20107787 (-)
A/J	MGP_AJ_G0040037	pseudogene	Chr13:19698438-19698981 (-)
AKR/J	MGP_AKRJ_G0039958	pseudogene	Chr13:19963888-19964431 (-)
BALB/cJ	MGP_BALBcJ_G0040013	pseudogene	Chr13:19707354-19707897 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040599	pseudogene	Chr13:20806199-20806742 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038766	pseudogene	Chr13:19722947-19723491 (-)
CBA/J	MGP_CBAJ_G0039628	pseudogene	Chr13:21516986-21517529 (-)
DBA/2J	MGP_DBA2J_G0039823	pseudogene	Chr13:19294518-19295061 (-)
FVB/NJ	MGP_FVBNJ_G0039795	pseudogene	Chr13:18903577-18904120 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039782	pseudogene	Chr13:21872942-21873485 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040692	pseudogene	Chr13:19759965-19760509 (-)
PWK/PhJ	MGP_PWKPhJ_G0038455	pseudogene	Chr13:19396665-19397209 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038163	pseudogene	Chr13:18364437-18364984 (+)
WSB/EiJ	MGP_WSBEiJ_G0038994	pseudogene	Chr13:19878620-19879163 (-)

Homology

• Gene Tree
  Vmn1r-ps112
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn1r-ps112
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000082540 (Evidence)
• NCBI Gene
  100312541

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082540	Ensembl Gene Model | MGI Sequence Detail	544	C57BL/6J
transcript	ENSMUST00000117475	Ensembl | MGI Sequence Detail	544	Not Applicable

Other
Accession IDs

MGI:3649807

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18