Vmn1r-ps125 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps125
• Name
  vomeronasal 1 receptor, pseudogene 125
• Synonyms
  Gm11323, Gm11332

• Feature Type
  pseudogene
• IDs
  MGI:4439076
  NCBI Gene: 100312554
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:23207421-23207710 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 9.47 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439076	pseudogene	Chr13:23207421-23207716 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040040	pseudogene	Chr13:20407094-20407383 (+)
A/J	MGP_AJ_G0040046	pseudogene	Chr13:19988530-19988819 (+)
AKR/J	MGP_AKRJ_G0039967	pseudogene	Chr13:20219738-20220027 (+)
BALB/cJ	MGP_BALBcJ_G0040022	pseudogene	Chr13:19965226-19965515 (+)
C3H/HeJ	MGP_C3HHeJ_G0039671	pseudogene	Chr13:20281623-20281912 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040608	pseudogene	Chr13:21115416-21115705 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038775	pseudogene	Chr13:20011292-20011581 (+)
CBA/J	MGP_CBAJ_G0039638	pseudogene	Chr13:21870626-21870915 (+)
DBA/2J	MGP_DBA2J_G0039832	pseudogene	Chr13:19571071-19571360 (+)
FVB/NJ	MGP_FVBNJ_G0039804	pseudogene	Chr13:19214707-19214996 (+)
LP/J	MGP_LPJ_G0039877	pseudogene	Chr13:20660601-20660890 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039788	pseudogene	Chr13:22227780-22228069 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040701	pseudogene	Chr13:20101032-20101321 (+)
PWK/PhJ	MGP_PWKPhJ_G0038464	pseudogene	Chr13:19621158-19621447 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038175	pseudogene	Chr13:18928865-18929154 (+)
WSB/EiJ	MGP_WSBEiJ_G0039002	pseudogene	Chr13:20241356-20241645 (+)

Homology

• Gene Tree
  Vmn1r-ps125
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn1r-ps125
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082656 (Evidence)
• NCBI Gene
  100312554

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082656	Ensembl Gene Model | MGI Sequence Detail	290	C57BL/6J
transcript	ENSMUST00000117767	Ensembl | MGI Sequence Detail	290	Not Applicable

Other
Accession IDs

MGI:3649433, MGI:3651035

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18