Trav15-1-dv6-1 Gene Detail

Summary

• Symbol
  Trav15-1-dv6-1
• Name
  T cell receptor alpha variable 15-1-DV6-1
• Synonyms
  Gm16591

• Feature Type
  gene segment
• IDs
  MGI:4439369
  NCBI Gene: 386446
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53797133-53797704 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.42 cM

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439369	gene segment	Chr14:53797089-53797704 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002534	gene segment	Chr14:46891105-46891720 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0002522	gene segment	Chr14:48151756-48152371 (+)
BALB/cJ	MGP_BALBcJ_G0002499	gene segment	Chr14:45803305-45803920 (+)
C3H/HeJ	MGP_C3HHeJ_G0002475	gene segment	Chr14:47144229-47144844 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002623	gene segment	Chr14:49016193-49016808 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002453	gene segment	Chr14:44169177-44169792 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0002479	gene segment	Chr14:45451525-45452130 (+)
FVB/NJ	MGP_FVBNJ_G0002513	gene segment	Chr14:45779499-45779798 (+)
LP/J	MGP_LPJ_G0002555	gene segment	Chr14:48416517-48417132 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002460	gene segment	Chr14:49966632-49967247 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002628	gene segment	Chr14:46691084-46691806 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002384	gene segment	Chr14:43441160-43441775 (+)
WSB/EiJ	MGP_WSBEiJ_G0002481	gene segment	Chr14:47043121-47043736 (+)

Homology

• Human Ortholog
  TRDV1, T cell receptor delta variable 1

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRDV1, T cell receptor delta variable 1
  
• Synonyms
  hDV101S1
• Links
  HGNC:12262

  NCBI Gene ID: 28518

  UniProt: A0A1B0GX56

  
  
• Chr Location
  14q11.2; chr14:22096032-22096619 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav15-1-dv6-1 stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: TRDV1
• Gene Tree
  Trav15-1-dv6-1
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000094016 (Evidence)
• NCBI Gene
  386446

Representative Sequences			Length	Strain/Species
genomic	386446	NCBI Gene Model | MGI Sequence Detail	572	C57BL/6J
polypeptide	Q5R1D2	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051006 T cell receptor variable domain

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61