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Ighv5-17 Gene Detail
Summary
  • Symbol
    Ighv5-17
  • Name
    immunoglobulin heavy variable 5-17
  • Synonyms
    Gm16609
  • Feature Type
    gene segment
  • IDs
    MGI:4439533
    NCBI Gene: 780794
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:113822769-113823062 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 62.21 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    160 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439533
 gene segment Chr12:113822769-113823290 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000049
 gene segment Chr12:116447083-116447604 (-)
A/J MGP_AJ_G0000051
 gene segment Chr12:111956088-111956609 (-)
AKR/J MGP_AKRJ_G0000052
 gene segment Chr12:115346378-115346889 (-)
BALB/cJ MGP_BALBcJ_G0000048
 gene segment Chr12:112398297-112398818 (-)
C3H/HeJ MGP_C3HHeJ_G0000049
 gene segment Chr12:115761792-115762303 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000067
 gene segment Chr12:120055888-120056409 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000037
 gene segment Chr12:108398193-108398709 (-)
CAST/EiJ MGP_CASTEiJ_G0000056
 gene segment Chr12:110659961-110660472 (-)
CBA/J MGP_CBAJ_G0000047
 gene segment Chr12:124690828-124691339 (-)
DBA/2J MGP_DBA2J_G0000052
 gene segment Chr12:111545031-111545552 (-)
FVB/NJ MGP_FVBNJ_G0000050
 gene segment Chr12:110262342-110262858 (-)
LP/J MGP_LPJ_G0000055
 gene segment Chr12:116394855-116395376 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000054
 gene segment Chr12:127795365-127795886 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000063
 gene segment Chr12:114747135-114747646 (-)
PWK/PhJ MGP_PWKPhJ_G0000045
 gene segment Chr12:106238349-106238870 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000042
 gene segment Chr12:108808151-108808672 (-)
WSB/EiJ MGP_WSBEiJ_G0000055
 gene segment Chr12:115692720-115693241 (-)



Homology
more
  • Human Ortholog
    IGHV3-11, immunoglobulin heavy variable 3-11
  • Vertebrate Orthologs
    12
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGHV3-11, immunoglobulin heavy variable 3-11
  • Synonyms
    IGHV311, VH
  • Links
    NCBI Gene ID: 28450
    UniProt: P01762

  • Chr Location
    14q32.33; chr14:106116635-106117204 (-)  GRCh38
  • Human Ortholog
    IGHV3-13, immunoglobulin heavy variable 3-13
  • Synonyms
    IGHV313
  • Links
    NCBI Gene ID: 28449
    UniProt: P01766

  • Chr Location
    14q32.33; chr14:106129540-106130072 (-)  GRCh38
  • Human Ortholog
    IGHV3-21, immunoglobulin heavy variable 3-21
  • Synonyms
    IGHV321, VH
  • Links
    NCBI Gene ID: 28444
    UniProt: A0A0B4J1V1

  • Chr Location
    14q32.33; chr14:106235062-106235594 (-)  GRCh38
  • Human Ortholog
    IGHV3-30, immunoglobulin heavy variable 3-30
  • Synonyms
    IGHV330, VH
  • Links
    NCBI Gene ID: 28439
    UniProt: P01768

  • Chr Location
    14q32.33; chr14:106335080-106335613 (-)  GRCh38
  • Human Ortholog
    IGHV3-30-3, immunoglobulin heavy variable 3-30-3
  • Synonyms
    IGHV3-3, IGHV3303
  • Links
    NCBI Gene ID: 57290
    UniProt: P0DP02

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-30-5, immunoglobulin heavy variable 3-30-5
  • Synonyms
    IGHV3-3, IGHV3305
  • Links
    NCBI Gene ID: 89770
    UniProt: P0DP03

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-33, immunoglobulin heavy variable 3-33
  • Synonyms
    IGHV333, VH
  • Links
    NCBI Gene ID: 28434
    UniProt: P01772

  • Chr Location
    14q32.33; chr14:106359791-106360324 (-)  GRCh38
  • Human Ortholog
    IGHV3-35, immunoglobulin heavy variable 3-35 (non-functional)
  • Synonyms
    IGHV335, VH
  • Links
    NCBI Gene ID: 28432
    UniProt: A0A0C4DH35

  • Chr Location
    14q32.33; chr14:106389390-106389858 (-)  GRCh38
  • Human Ortholog
    IGHV3-48, immunoglobulin heavy variable 3-48
  • Synonyms
    IGHV348, VH
  • Links
    NCBI Gene ID: 28424
    UniProt: P01763

  • Chr Location
    14q32.33; chr14:106537810-106538344 (-)  GRCh38
  • Human Ortholog
    IGHV3-7, immunoglobulin heavy variable 3-7
  • Synonyms
    IGHV37, VH
  • Links
    NCBI Gene ID: 28452
    UniProt: P01780

  • Chr Location
    14q32.33; chr14:106062149-106062683 (-)  GRCh38
  • Human Ortholog
    IGHV3OR16-13, immunoglobulin heavy variable 3/OR16-13 (non-functional)
  • Synonyms
    IGHV3OR1613
  • Links
    NCBI Gene ID: 100287372

  • Chr Location
    chr16:33827214-33827661 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 780794 NCBI Gene Model | MGI Sequence Detail 294 C57BL/6J ±  kb
transcript J00522 GenBank | ENA | DDBJ | MGI Sequence Detail 408 Not Specified  
polypeptide A0A075B5R1 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR050199 Immunoglobulin Heavy Variable
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 7
    Gene Ontology 1
  • Earliest
    J:6532 Bothwell AL, et al., Heavy chain variable region contribution to the NPb family of antibodies: somatic mutation evident in a gamma 2a variable region. Cell. 1981 Jun;24(3):625-37
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory