Gm16617 Gene Detail

Summary

• Symbol
  Gm16617
• Name
  predicted gene, 16617

• Feature Type
  lncRNA gene
• IDs
  MGI:4439541
  NCBI Gene: 100502764
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:52223882-52226284 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 26.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439541	lncRNA gene	Chr14:52223846-52226286 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005548	lincRNA gene	Chr14:45997027-45999503 (-)
A/J	MGP_AJ_G0005533	lincRNA gene	Chr14:44804558-44810323 (-)
AKR/J	MGP_AKRJ_G0005512	lincRNA gene	Chr14:46420669-46423100 (-)
BALB/cJ	MGP_BALBcJ_G0005515	lincRNA gene	Chr14:44912918-44915394 (-)
C3H/HeJ	MGP_C3HHeJ_G0005461	lincRNA gene	Chr14:46232901-46235377 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005671	lincRNA gene	Chr14:48030244-48032684 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005040	lincRNA gene	Chr14:44000468-44002914 (-)
CAST/EiJ	MGP_CASTEiJ_G0005405	lincRNA gene	Chr14:43205188-43207599 (-)
CBA/J	MGP_CBAJ_G0005451	lincRNA gene	Chr14:49497462-49499938 (-)
DBA/2J	MGP_DBA2J_G0005466	lincRNA gene	Chr14:44570587-44573027 (-)
FVB/NJ	MGP_FVBNJ_G0005492	lincRNA gene	Chr14:44160629-44163070 (-)
LP/J	MGP_LPJ_G0005551	lincRNA gene	Chr14:46600517-46602993 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005477	lincRNA gene	Chr14:48950289-48952783 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005670	lincRNA gene	Chr14:45806607-45809083 (-)
PWK/PhJ	MGP_PWKPhJ_G0005355	lincRNA gene	Chr14:41324447-41326985 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005273	lincRNA gene	Chr14:41831845-41834276 (-)
WSB/EiJ	MGP_WSBEiJ_G0005455	lincRNA gene	Chr14:46127191-46130659 (-)

Homology

• Gene Tree
  Gm16617
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16617
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097633 (Evidence)
• NCBI Gene
  100502764

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097633	Ensembl Gene Model | MGI Sequence Detail	2403	C57BL/6J
transcript	ENSMUST00000181008	Ensembl | MGI Sequence Detail	675	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm16617:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128466	Chr14:52226289-52226294 (-)	-8 bp