Igkv14-100 Gene Detail

Summary

• Symbol
  Igkv14-100
• Name
  immunoglobulin kappa chain variable 14-100
• Synonyms
  Gm16635

• Feature Type
  gene segment
• IDs
  MGI:4439559
  NCBI Gene: 243439
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:68495996-68496461 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439559	gene segment	Chr6:68495996-68496461 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000128	gene segment	Chr6:68726645-68727110 (+)
A/J	MGP_AJ_G0000119	gene segment	Chr6:65816823-65817288 (+)
AKR/J	MGP_AKRJ_G0000125	gene segment	Chr6:67769744-67770209 (+)
BALB/cJ	MGP_BALBcJ_G0000114	gene segment	Chr6:66104783-66105248 (+)
C3H/HeJ	MGP_C3HHeJ_G0000137	gene segment	Chr6:116399336-116399801 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000167	gene segment	Chr6:70405269-70405734 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000125	gene segment	Chr6:68122903-68123368 (+)
CBA/J	MGP_CBAJ_G0000119	gene segment	Chr6:73179353-73179818 (+)
DBA/2J	MGP_DBA2J_G0000114	gene segment	Chr6:65414382-65414847 (+)
FVB/NJ	MGP_FVBNJ_G0000114	gene segment	Chr6:64864453-64864918 (+)
LP/J	MGP_LPJ_G0000131	gene segment	Chr6:68544171-68544636 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000126	gene segment	Chr6:76916090-76916555 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000151	gene segment	Chr6:67835457-67835922 (+)
PWK/PhJ	MGP_PWKPhJ_G0000095	gene segment	Chr16:54758-55223 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000084	gene segment	Chr6:67228520-67228985 (+)
WSB/EiJ	MGP_WSBEiJ_G0000124	gene segment	Chr6:68158767-68159233 (+)

Homology

• MGI Vertebrate Homology
  Igkv14-100 stringent orthology
  1 mouse;1 zebrafish
  
• Gene Tree
  Igkv14-100
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096515 (Evidence)
• NCBI Gene
  243439

Representative Sequences			Length	Strain/Species
genomic	243439	NCBI Gene Model | MGI Sequence Detail	466	C57BL/6J
transcript	X59052	GenBank | ENA | DDBJ | MGI Sequence Detail	337	Balb /cBk1*
polypeptide	A0A0G2JG36	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR003599 Immunoglobulin subtype
  IPR050150 Immunoglobulin Variable Light Chain
  IPR013106 Immunoglobulin V-set domain

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:21660 Recinos A 3rd, et al., Sequences of cDNAs encoding immunoglobulin heavy- and light-chain variable regions from two anti-dioxin monoclonal antibodies [published erratum appears in Gene 1995 Jun 9;158(2):311]. Gene. 1994 Nov 18;149(2):385-6
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Igkv14-100:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56927	Chr6:68495965-68495981 (+)	-23 bp