Trbj1-1 Gene Detail

Summary

• Symbol
  Trbj1-1
• Name
  T cell receptor beta joining 1-1
• Synonyms
  Gm16646

• Feature Type
  gene segment
• IDs
  MGI:4439570
  NCBI Gene: 100125248
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr6:41510798-41510845 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439570	gene segment	Chr6:41510798-41510845 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002486	gene segment	Chr6:40041325-40041372 (+)
A/J	MGP_AJ_G0002460	gene segment	Chr6:38295413-38295460 (+)
AKR/J	MGP_AKRJ_G0002446	gene segment	Chr6:39533682-39533729 (+)
BALB/cJ	MGP_BALBcJ_G0002460	gene segment	Chr6:38514296-38514343 (+)
C3H/HeJ	MGP_C3HHeJ_G0002433	gene segment	Chr6:39564600-39564647 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002581	gene segment	Chr6:41055572-41055619 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002179	gene segment	Chr6:36075003-36075050 (+)
CAST/EiJ	MGP_CASTEiJ_G0002395	gene segment	Chr6:39367830-39367877 (+)
CBA/J	MGP_CBAJ_G0002424	gene segment	Chr6:42758319-42758366 (+)
DBA/2J	MGP_DBA2J_G0002435	gene segment	Chr6:38139188-38139235 (+)
FVB/NJ	MGP_FVBNJ_G0002443	gene segment	Chr6:37852462-37852509 (+)
LP/J	MGP_LPJ_G0002483	gene segment	Chr6:40050385-40050432 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002413	gene segment	Chr6:44993382-44993429 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002576	gene segment	Chr6:39510627-39510674 (+)
PWK/PhJ	MGP_PWKPhJ_G0002356	gene segment	Chr6:37745960-37746007 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002308	gene segment	Chr6:39126728-39126775 (+)
WSB/EiJ	MGP_WSBEiJ_G0002422	gene segment	Chr6:39421728-39421775 (+)

Homology

• Gene Tree
  Trbj1-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076483 (Evidence)
• NCBI Gene
  100125248

Representative Sequences			Length	Strain/Species
genomic	100125248	NCBI Gene Model | MGI Sequence Detail	48	C57BL/6J
polypeptide	A0A0A6YVY0	UniProt | EBI | MGI Sequence Detail	16	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6
• Earliest
  J:7518 Gascoigne NR, et al., Genomic organization and sequence of T-cell receptor beta-chain constant- and joining-region genes. Nature. 1984 Aug 2-8;310(5976):387-91
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj1-1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55897	Chr6:41510154-41510161 (+)	-640 bp
Tssr55898	Chr6:41510180-41510191 (+)	-612 bp
Tssr55899	Chr6:41510201-41510212 (+)	-591 bp
Tssr55900	Chr6:41510440-41510452 (+)	-352 bp
Tssr55901	Chr6:41510605-41510616 (+)	-187 bp
Tssr55902	Chr6:41510662-41510686 (+)	-124 bp
Tssr55903	Chr6:41510700-41510721 (+)	-87 bp
Tssr55904	Chr6:41510723-41510734 (+)	-69 bp
Tssr55905	Chr6:41510752-41510769 (+)	-37 bp
Tssr55906	Chr6:41510788-41510815 (+)	4 bp
Tssr55907	Chr6:41510839-41510844 (+)	44 bp