Traj16 Gene Detail

Summary

• Symbol
  Traj16
• Name
  T cell receptor alpha joining 16
• Synonyms
  Gm16656

• Feature Type
  gene segment
• IDs
  MGI:4439580
  NCBI Gene: 100124387
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54440591-54440651 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439580	gene segment	Chr14:54440591-54440651 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002474	gene segment	Chr14:48131419-48131479 (+)
A/J	MGP_AJ_G0002448	gene segment	Chr14:47223368-47223428 (+)
AKR/J	MGP_AKRJ_G0002434	gene segment	Chr14:48932353-48932413 (+)
BALB/cJ	MGP_BALBcJ_G0002442	gene segment	Chr14:47192149-47192209 (+)
C3H/HeJ	MGP_C3HHeJ_G0002421	gene segment	Chr14:48613173-48613233 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002569	gene segment	Chr14:50596895-50596955 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002167	gene segment	Chr14:45636007-45636067 (+)
CAST/EiJ	MGP_CASTEiJ_G0002383	gene segment	Chr14:44845301-44845361 (+)
CBA/J	MGP_CBAJ_G0002412	gene segment	Chr14:52090559-52090619 (+)
DBA/2J	MGP_DBA2J_G0002417	gene segment	Chr14:46967530-46967590 (+)
FVB/NJ	MGP_FVBNJ_G0002431	gene segment	Chr14:46421813-46421873 (+)
LP/J	MGP_LPJ_G0002471	gene segment	Chr14:49162598-49162658 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002401	gene segment	Chr14:51532512-51532572 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002564	gene segment	Chr14:48114093-48114153 (+)
PWK/PhJ	MGP_PWKPhJ_G0002344	gene segment	Chr14:43491160-43491220 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002296	gene segment	Chr14:44090984-44091044 (+)
WSB/EiJ	MGP_WSBEiJ_G0002410	gene segment	Chr14:48405911-48405971 (+)

Homology

• Gene Tree
  Traj16
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj16
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076913 (Evidence)
• NCBI Gene
  100124387

Representative Sequences			Length	Strain/Species
genomic	100124387	NCBI Gene Model | MGI Sequence Detail	61	C57BL/6J
polypeptide	A0A0G2JEK3	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61