Traj15 Gene Detail

Summary

• Symbol
  Traj15
• Name
  T cell receptor alpha joining 15
• Synonyms
  Gm16658

• Feature Type
  gene segment
• IDs
  MGI:4439582
  NCBI Gene: 100124388
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54441879-54441938 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439582	gene segment	Chr14:54441879-54441938 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002475	gene segment	Chr14:48132707-48132766 (+)
A/J	MGP_AJ_G0002449	gene segment	Chr14:47224656-47224715 (+)
AKR/J	MGP_AKRJ_G0002435	gene segment	Chr14:48933641-48933700 (+)
BALB/cJ	MGP_BALBcJ_G0002443	gene segment	Chr14:47193437-47193496 (+)
C3H/HeJ	MGP_C3HHeJ_G0002422	gene segment	Chr14:48614461-48614520 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002570	gene segment	Chr14:50598183-50598242 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002168	gene segment	Chr14:45637300-45637359 (+)
CAST/EiJ	MGP_CASTEiJ_G0002384	gene segment	Chr14:44846588-44846647 (+)
CBA/J	MGP_CBAJ_G0002413	gene segment	Chr14:52091847-52091906 (+)
DBA/2J	MGP_DBA2J_G0002418	gene segment	Chr14:46968819-46968878 (+)
FVB/NJ	MGP_FVBNJ_G0002432	gene segment	Chr14:46423102-46423161 (+)
LP/J	MGP_LPJ_G0002472	gene segment	Chr14:49163886-49163945 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002402	gene segment	Chr14:51533801-51533860 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002565	gene segment	Chr14:48115381-48115440 (+)
PWK/PhJ	MGP_PWKPhJ_G0002345	gene segment	Chr14:43492448-43492507 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002297	gene segment	Chr14:44092269-44092328 (+)
WSB/EiJ	MGP_WSBEiJ_G0002411	gene segment	Chr14:48407200-48407259 (+)

Homology

• Gene Tree
  Traj15
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj15
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076914 (Evidence)
• NCBI Gene
  100124388

Representative Sequences			Length	Strain/Species
genomic	100124388	NCBI Gene Model | MGI Sequence Detail	60	C57BL/6J
polypeptide	A0A0G2JG86	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61