Traj12 Gene Detail

Summary

• Symbol
  Traj12
• Name
  T cell receptor alpha joining 12
• Synonyms
  Gm16659

• Feature Type
  gene segment
• IDs
  MGI:4439583
  NCBI Gene: 100124391
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54444010-54444067 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439583	gene segment	Chr14:54444009-54444067 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002477	gene segment	Chr14:48134841-48134898 (+)
A/J	MGP_AJ_G0002451	gene segment	Chr14:47226790-47226847 (+)
AKR/J	MGP_AKRJ_G0002437	gene segment	Chr14:48935775-48935832 (+)
BALB/cJ	MGP_BALBcJ_G0002445	gene segment	Chr14:47195571-47195628 (+)
C3H/HeJ	MGP_C3HHeJ_G0002424	gene segment	Chr14:48616595-48616652 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002572	gene segment	Chr14:50600314-50600371 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002170	gene segment	Chr14:45639444-45639501 (+)
CAST/EiJ	MGP_CASTEiJ_G0002386	gene segment	Chr14:44848722-44848779 (+)
CBA/J	MGP_CBAJ_G0002415	gene segment	Chr14:52093981-52094038 (+)
DBA/2J	MGP_DBA2J_G0002420	gene segment	Chr14:46970953-46971010 (+)
FVB/NJ	MGP_FVBNJ_G0002434	gene segment	Chr14:46425236-46425293 (+)
LP/J	MGP_LPJ_G0002474	gene segment	Chr14:49166020-49166077 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002404	gene segment	Chr14:51535935-51535992 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002567	gene segment	Chr14:48117515-48117572 (+)
PWK/PhJ	MGP_PWKPhJ_G0002347	gene segment	Chr14:43494582-43494639 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002299	gene segment	Chr14:44094405-44094462 (+)
WSB/EiJ	MGP_WSBEiJ_G0002413	gene segment	Chr14:48409327-48409384 (+)

Homology

• Gene Tree
  Traj12
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj12
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076917 (Evidence)
• NCBI Gene
  100124391

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000076917	Ensembl Gene Model | MGI Sequence Detail	58	C57BL/6J
transcript	ENSMUST00000103729	Ensembl | MGI Sequence Detail	58	Not Applicable
polypeptide	ENSMUSP00000142357	Ensembl | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61