Traj38 Gene Detail

Summary

• Symbol
  Traj38
• Name
  T cell receptor alpha joining 38
• Synonyms
  Gm16670

• Feature Type
  gene segment
• IDs
  MGI:4439594
  NCBI Gene: 100124351
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54418031-54418092 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439594	gene segment	Chr14:54418031-54418092 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002453	gene segment	Chr14:48108976-48109037 (+)
A/J	MGP_AJ_G0002427	gene segment	Chr14:47200865-47200926 (+)
AKR/J	MGP_AKRJ_G0002413	gene segment	Chr14:48908290-48908351 (+)
BALB/cJ	MGP_BALBcJ_G0002421	gene segment	Chr14:47169287-47169348 (+)
C3H/HeJ	MGP_C3HHeJ_G0002400	gene segment	Chr14:48590366-48590427 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002548	gene segment	Chr14:50574435-50574496 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002147	gene segment	Chr14:45613645-45613706 (+)
CAST/EiJ	MGP_CASTEiJ_G0002362	gene segment	Chr14:44822062-44822123 (+)
CBA/J	MGP_CBAJ_G0002391	gene segment	Chr14:52065061-52065122 (+)
DBA/2J	MGP_DBA2J_G0002396	gene segment	Chr14:46944612-46944673 (+)
FVB/NJ	MGP_FVBNJ_G0002410	gene segment	Chr14:46399367-46399428 (+)
LP/J	MGP_LPJ_G0002450	gene segment	Chr14:49134019-49134080 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002380	gene segment	Chr14:51509205-51509266 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002543	gene segment	Chr14:48091637-48091698 (+)
PWK/PhJ	MGP_PWKPhJ_G0002323	gene segment	Chr14:43468106-43468167 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002275	gene segment	Chr14:44067184-44067245 (+)
WSB/EiJ	MGP_WSBEiJ_G0002389	gene segment	Chr14:48381539-48381600 (+)

Homology

• Human Ortholog
  TRAJ38, T cell receptor alpha joining 38

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAJ38, T cell receptor alpha joining 38
  
• Links
  HGNC:12068

  NCBI Gene ID: 28717

  
  
• Chr Location
  14q11.2; chr14:22502231-22502292 (+)  GRCh38

---

• MGI Vertebrate Homology
  Traj38 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAJ38
• Gene Tree
  Traj38
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj38
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076892 (Evidence)
• NCBI Gene
  100124351

Representative Sequences			Length	Strain/Species
genomic	100124351	NCBI Gene Model | MGI Sequence Detail	62	C57BL/6J
polypeptide	A0A0G2JFM0	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61