Gm16701 Gene Detail

Summary

• Symbol
  Gm16701
• Name
  predicted gene, 16701
• Synonyms
  ln-CR2

• Feature Type
  lncRNA gene
• IDs
  MGI:4439625
  NCBI Gene: 100503962
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:166801592-166827299 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 74.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  763 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439625	lncRNA gene	Chr1:166801592-166828410 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005032	lincRNA gene	Chr1:172515294-172535721 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005033	lincRNA gene	Chr1:172534288-172538412 (-)
A/J	MGP_AJ_G0005015	lincRNA gene	Chr1:165500003-165502549 (-)
A/J	MGP_AJ_G0005014	lincRNA gene	Chr1:165482018-165501436 (-)
AKR/J	MGP_AKRJ_G0004992	lincRNA gene	Chr1:170493691-170515327 (-)
AKR/J	MGP_AKRJ_G0004993	lincRNA gene	Chr1:170513894-170516439 (-)
BALB/cJ	MGP_BALBcJ_G0004996	lincRNA gene	Chr1:165965512-165985256 (-)
BALB/cJ	MGP_BALBcJ_G0004997	lincRNA gene	Chr1:165983823-165986620 (-)
C3H/HeJ	MGP_C3HHeJ_G0004944	lincRNA gene	Chr1:170711983-170734534 (-)
C3H/HeJ	MGP_C3HHeJ_G0004945	lincRNA gene	Chr1:170733101-170735647 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005147	lincRNA gene	Chr1:178312894-178315488 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005146	lincRNA gene	Chr1:178294909-178314327 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004556	lincRNA gene	Chr1:157339750-157359129 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004557	lincRNA gene	Chr1:157357697-157360248 (-)
CAST/EiJ	MGP_CASTEiJ_G0004893	lincRNA gene	Chr1:170322410-170325047 (-)
CAST/EiJ	MGP_CASTEiJ_G0004892	lincRNA gene	Chr1:170304487-170323884 (-)
CBA/J	MGP_CBAJ_G0004935	lincRNA gene	Chr1:184623090-184646401 (-)
CBA/J	MGP_CBAJ_G0004936	lincRNA gene	Chr1:184644968-184647551 (-)
DBA/2J	MGP_DBA2J_G0004954	lincRNA gene	Chr1:164338366-164357519 (-)
DBA/2J	MGP_DBA2J_G0004955	lincRNA gene	Chr1:164356013-164358641 (-)
FVB/NJ	MGP_FVBNJ_G0004975	lincRNA gene	Chr1:162779075-162798971 (-)
FVB/NJ	MGP_FVBNJ_G0004976	lincRNA gene	Chr1:162797538-162800080 (-)
LP/J	MGP_LPJ_G0005032	lincRNA gene	Chr1:173587372-173606655 (-)
LP/J	MGP_LPJ_G0005033	lincRNA gene	Chr1:173605222-173607768 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004959	lincRNA gene	Chr1:192027753-192049910 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004960	lincRNA gene	Chr1:192048477-192051070 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005152	lincRNA gene	Chr1:170372113-170374660 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005151	lincRNA gene	Chr1:170349952-170373546 (-)
PWK/PhJ	MGP_PWKPhJ_G0004843	lincRNA gene	Chr1:163535626-163554777 (-)
PWK/PhJ	MGP_PWKPhJ_G0004844	lincRNA gene	Chr1:163553336-163555962 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004770	lincRNA gene	Chr1:169135804-169138322 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004769	lincRNA gene	Chr1:169117368-169137228 (-)
WSB/EiJ	MGP_WSBEiJ_G0004939	lincRNA gene	Chr1:170469635-170473915 (-)
WSB/EiJ	MGP_WSBEiJ_G0004938	lincRNA gene	Chr1:170451728-170471071 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm16701
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2
• Literature Summary
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000097823 (Evidence), ENSMUSG00000102548 (Evidence)
• NCBI Gene
  100503962

Representative Sequences			Length	Strain/Species
genomic	100503962	NCBI Gene Model | MGI Sequence Detail	25708	C57BL/6J
transcript	NR_037988	RefSeq | MGI Sequence Detail	936	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:339532 Li J, et al., Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. PLoS Genet. 2021 Mar;17(3):e1009355