Traj27 Gene Detail

Summary

• Symbol
  Traj27
• Name
  T cell receptor alpha joining 27
• Synonyms
  Gm16817

• Feature Type
  gene segment
• IDs
  MGI:4439741
  NCBI Gene: 100124362
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54429760-54429818 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439741	gene segment	Chr14:54429760-54429818 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002463	gene segment	Chr14:48120606-48120664 (+)
A/J	MGP_AJ_G0002437	gene segment	Chr14:47212523-47212581 (+)
AKR/J	MGP_AKRJ_G0002423	gene segment	Chr14:48921531-48921589 (+)
BALB/cJ	MGP_BALBcJ_G0002431	gene segment	Chr14:47180887-47180945 (+)
C3H/HeJ	MGP_C3HHeJ_G0002410	gene segment	Chr14:48602132-48602190 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002558	gene segment	Chr14:50586107-50586165 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002156	gene segment	Chr14:45625313-45625371 (+)
CAST/EiJ	MGP_CASTEiJ_G0002372	gene segment	Chr14:44834685-44834743 (+)
CBA/J	MGP_CBAJ_G0002401	gene segment	Chr14:52076657-52076715 (+)
DBA/2J	MGP_DBA2J_G0002406	gene segment	Chr14:46956715-46956773 (+)
FVB/NJ	MGP_FVBNJ_G0002420	gene segment	Chr14:46410987-46411045 (+)
LP/J	MGP_LPJ_G0002460	gene segment	Chr14:49145633-49145691 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002390	gene segment	Chr14:51520802-51520860 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002553	gene segment	Chr14:48103247-48103305 (+)
PWK/PhJ	MGP_PWKPhJ_G0002333	gene segment	Chr14:43480102-43480160 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002285	gene segment	Chr14:44080191-44080249 (+)
WSB/EiJ	MGP_WSBEiJ_G0002399	gene segment	Chr14:48393911-48393969 (+)

Homology

• Gene Tree
  Traj27
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj27
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076902 (Evidence)
• NCBI Gene
  100124362

Representative Sequences			Length	Strain/Species
genomic	100124362	NCBI Gene Model | MGI Sequence Detail	59	C57BL/6J
polypeptide	A0A0G2JFL6	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj27:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125581	Chr14:54429713-54429744 (+)	-31 bp
Tssr125582	Chr14:54429758-54429772 (+)	5 bp