Traj24 Gene Detail

Summary

• Symbol
  Traj24
• Name
  T cell receptor alpha joining 24
• Synonyms
  Gm16824

• Feature Type
  gene segment
• IDs
  MGI:4439748
  NCBI Gene: 100124365
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54433102-54433157 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439748	gene segment	Chr14:54433095-54433157 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002466	gene segment	Chr14:48123950-48124012 (+)
A/J	MGP_AJ_G0002440	gene segment	Chr14:47215861-47215923 (+)
AKR/J	MGP_AKRJ_G0002426	gene segment	Chr14:48924856-48924918 (+)
BALB/cJ	MGP_BALBcJ_G0002434	gene segment	Chr14:47184667-47184729 (+)
C3H/HeJ	MGP_C3HHeJ_G0002413	gene segment	Chr14:48605544-48605606 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002561	gene segment	Chr14:50589430-50589492 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002159	gene segment	Chr14:45628548-45628610 (+)
CAST/EiJ	MGP_CASTEiJ_G0002375	gene segment	Chr14:44838023-44838085 (+)
CBA/J	MGP_CBAJ_G0002404	gene segment	Chr14:52080031-52080093 (+)
DBA/2J	MGP_DBA2J_G0002409	gene segment	Chr14:46960060-46960122 (+)
FVB/NJ	MGP_FVBNJ_G0002423	gene segment	Chr14:46414334-46414396 (+)
LP/J	MGP_LPJ_G0002463	gene segment	Chr14:49153580-49153642 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002393	gene segment	Chr14:51525033-51525095 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002556	gene segment	Chr14:48106602-48106664 (+)
PWK/PhJ	MGP_PWKPhJ_G0002336	gene segment	Chr14:43483534-43483596 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002288	gene segment	Chr14:44083527-44083589 (+)
WSB/EiJ	MGP_WSBEiJ_G0002402	gene segment	Chr14:48398431-48398493 (+)

Homology

• Gene Tree
  Traj24
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj24
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076905 (Evidence)
• NCBI Gene
  100124365

Representative Sequences			Length	Strain/Species
genomic	100124365	NCBI Gene Model | MGI Sequence Detail	56	C57BL/6J
polypeptide	A0A0G2JEV8	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61