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Platr22 Gene Detail
Summary
  • Symbol
    Platr22
  • Name
    pluripotency associated transcript 22
  • Synonyms
    Gm16880
  • Feature Type
    lncRNA gene
  • IDs
    MGI:4439804
    NCBI Gene: 100503474
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:136623949-136653466 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 59.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    925 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439804
 lncRNA gene Chr1:136623949-136653880 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004982
 lincRNA gene Chr1:140558755-140598268 (+)
A/J MGP_AJ_G0004964
 lincRNA gene Chr1:135209831-135240625 (+)
AKR/J MGP_AKRJ_G0004941
 lincRNA gene Chr1:139243998-139275108 (+)
BALB/cJ MGP_BALBcJ_G0004945
 lincRNA gene Chr1:135553297-135583744 (+)
C3H/HeJ MGP_C3HHeJ_G0004894
 lincRNA gene Chr1:139343612-139378546 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005095
 lincRNA gene Chr1:145558018-145593351 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004510
 lincRNA gene Chr1:128315103-128345364 (+)
CAST/EiJ MGP_CASTEiJ_G0004843
 lincRNA gene Chr1:138464115-138500784 (+)
CBA/J MGP_CBAJ_G0004885
 lincRNA gene Chr1:150610319-150647522 (+)
DBA/2J MGP_DBA2J_G0004905
 lincRNA gene Chr1:134203300-134232862 (+)
FVB/NJ MGP_FVBNJ_G0004924
 lincRNA gene Chr1:132853332-132883032 (+)
LP/J MGP_LPJ_G0004982
 lincRNA gene Chr1:141757193-141790431 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004909
 lincRNA gene Chr1:156243077-156280721 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005100
 lincRNA gene Chr1:139011409-139045317 (+)
PWK/PhJ MGP_PWKPhJ_G0004795
 lincRNA gene Chr1:133267796-133298044 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004720
 lincRNA gene Chr1:137994327-138028887 (+)
WSB/EiJ MGP_WSBEiJ_G0004890
 lincRNA gene Chr1:139038217-139077140 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100503474 NCBI Gene Model | MGI Sequence Detail 29518 C57BL/6J ±  kb
transcript NR_037986 RefSeq | MGI Sequence Detail 1199 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 16
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory