Gm16982 Gene Detail

Summary

• Symbol
  Gm16982
• Name
  predicted gene, 16982

• Feature Type
  lncRNA gene
• IDs
  MGI:4439906
  NCBI Gene: 100036523
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:141189979-141193660 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 87.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439906	lncRNA gene	Chr7:141189979-141193660 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004521	antisense lncRNA gene	Chr7:146809531-146813212 (-)
A/J	MGP_AJ_G0004501	antisense lncRNA gene	Chr7:142613951-142617632 (-)
AKR/J	MGP_AKRJ_G0004484	antisense lncRNA gene	Chr7:146571533-146575214 (-)
BALB/cJ	MGP_BALBcJ_G0004486	antisense lncRNA gene	Chr7:142352768-142356449 (-)
C3H/HeJ	MGP_C3HHeJ_G0004435	antisense lncRNA gene	Chr7:146306290-146309971 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004636	antisense lncRNA gene	Chr7:152161613-152165294 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004090	antisense lncRNA gene	Chr7:143815239-143819703 (-)
CAST/EiJ	MGP_CASTEiJ_G0004395	antisense lncRNA gene	Chr7:138628360-138632033 (-)
CBA/J	MGP_CBAJ_G0004430	antisense lncRNA gene	Chr7:157334203-157337884 (-)
DBA/2J	MGP_DBA2J_G0004444	antisense lncRNA gene	Chr7:140555140-140558821 (-)
FVB/NJ	MGP_FVBNJ_G0004461	antisense lncRNA gene	Chr7:140466919-140470600 (-)
LP/J	MGP_LPJ_G0004525	antisense lncRNA gene	Chr7:148303691-148307372 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004450	antisense lncRNA gene	Chr7:157966284-157969965 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004635	antisense lncRNA gene	Chr7:145523579-145527260 (-)
PWK/PhJ	MGP_PWKPhJ_G0004348	antisense lncRNA gene	Chr7:133842506-133846239 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004289	antisense lncRNA gene	Chr7:132364280-132367932 (-)
WSB/EiJ	MGP_WSBEiJ_G0004434	antisense lncRNA gene	Chr7:146480243-146483925 (-)

Homology

• Gene Tree
  Gm16982
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm16982
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097170 (Evidence)
• NCBI Gene
  100036523

Representative Sequences			Length	Strain/Species
genomic	100036523	NCBI Gene Model | MGI Sequence Detail	3682	C57BL/6J
transcript	NR_040337	RefSeq | MGI Sequence Detail	2620	C57BL/6

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33

TSS for Gm16982:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75670	Chr7:141193625-141193640 (-)	27 bp