Gm16998 Gene Detail

Summary

• Symbol
  Gm16998
• Name
  predicted gene, 16998

• Feature Type
  lncRNA gene
• IDs
  MGI:4439922
  NCBI Gene: 100502920
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:53952018-53957177 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 27.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439922	lncRNA gene	Chr10:53952018-53957177 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005117	lincRNA gene	Chr10:53280560-53285719 (+)
A/J	MGP_AJ_G0005100	lincRNA gene	Chr10:51702457-51707616 (+)
AKR/J	MGP_AKRJ_G0005078	lincRNA gene	Chr10:52716076-52721235 (+)
BALB/cJ	MGP_BALBcJ_G0005081	lincRNA gene	Chr10:51836026-51841185 (+)
C3H/HeJ	MGP_C3HHeJ_G0005030	lincRNA gene	Chr10:52981863-52988575 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005231	lincRNA gene	Chr10:54948908-54955364 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004637	lincRNA gene	Chr10:48859968-48865118 (+)
CAST/EiJ	MGP_CASTEiJ_G0004977	lincRNA gene	Chr10:53073170-53078494 (+)
CBA/J	MGP_CBAJ_G0005020	lincRNA gene	Chr10:57250250-57257506 (+)
DBA/2J	MGP_DBA2J_G0005039	lincRNA gene	Chr10:51139466-51144625 (+)
FVB/NJ	MGP_FVBNJ_G0005061	lincRNA gene	Chr10:50434245-50439404 (+)
LP/J	MGP_LPJ_G0005118	lincRNA gene	Chr10:53351916-53357075 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005044	lincRNA gene	Chr10:59226058-59232645 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005238	lincRNA gene	Chr10:52643776-52648935 (+)
PWK/PhJ	MGP_PWKPhJ_G0004928	lincRNA gene	Chr10:50986928-50992070 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004853	lincRNA gene	Chr10:52278582-52283867 (+)
WSB/EiJ	MGP_WSBEiJ_G0005024	lincRNA gene	Chr10:52883674-52888836 (+)

Homology

• Gene Tree
  Gm16998
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16998
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097069 (Evidence)
• NCBI Gene
  100502920

Representative Sequences			Length	Strain/Species
genomic	100502920	NCBI Gene Model | MGI Sequence Detail	5160	C57BL/6J
transcript	NR_038016	RefSeq | MGI Sequence Detail	1230	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16998:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93344	Chr10:53950116-53950123 (+)	-1,898 bp
Tssr93345	Chr10:53950605-53950620 (+)	-1,405 bp
Tssr93346	Chr10:53950633-53950668 (+)	-1,367 bp