Traj50 Gene Detail

Summary

• Symbol
  Traj50
• Name
  T cell receptor alpha joining 50
• Synonyms
  Gm17007

• Feature Type
  gene segment
• IDs
  MGI:4440517
  NCBI Gene: 100124338
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54405047-54405109 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4440517	gene segment	Chr14:54405047-54405109 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002441	gene segment	Chr14:48095995-48096057 (+)
A/J	MGP_AJ_G0002415	gene segment	Chr14:47187931-47187993 (+)
AKR/J	MGP_AKRJ_G0002401	gene segment	Chr14:48895361-48895423 (+)
BALB/cJ	MGP_BALBcJ_G0002409	gene segment	Chr14:47156363-47156425 (+)
C3H/HeJ	MGP_C3HHeJ_G0002388	gene segment	Chr14:48577324-48577386 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002536	gene segment	Chr14:50561482-50561544 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002135	gene segment	Chr14:45600773-45600835 (+)
CAST/EiJ	MGP_CASTEiJ_G0002350	gene segment	Chr14:44809143-44809205 (+)
CBA/J	MGP_CBAJ_G0002379	gene segment	Chr14:52052142-52052204 (+)
DBA/2J	MGP_DBA2J_G0002384	gene segment	Chr14:46931692-46931754 (+)
FVB/NJ	MGP_FVBNJ_G0002398	gene segment	Chr14:46386435-46386497 (+)
LP/J	MGP_LPJ_G0002438	gene segment	Chr14:49121010-49121072 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002368	gene segment	Chr14:51496292-51496354 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002531	gene segment	Chr14:48078703-48078765 (+)
PWK/PhJ	MGP_PWKPhJ_G0002311	gene segment	Chr14:43455063-43455125 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002263	gene segment	Chr14:44054116-44054178 (+)
WSB/EiJ	MGP_WSBEiJ_G0002377	gene segment	Chr14:48368638-48368700 (+)

Homology

• Gene Tree
  Traj50
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj50
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076881 (Evidence)
• NCBI Gene
  100124338

Representative Sequences			Length	Strain/Species
genomic	100124338	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
polypeptide	A0A0G2JEE5	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj50:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125549	Chr14:54403978-54404003 (+)	-1,056 bp
Tssr125550	Chr14:54404006-54404033 (+)	-1,027 bp