Traj31 Gene Detail

Summary

• Symbol
  Traj31
• Name
  T cell receptor alpha joining 31
• Synonyms
  Gm17008

• Feature Type
  gene segment
• IDs
  MGI:4440519
  NCBI Gene: 100124358
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54425352-54425408 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4440519	gene segment	Chr14:54425352-54425408 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002459	gene segment	Chr14:48116243-48116299 (+)
A/J	MGP_AJ_G0002433	gene segment	Chr14:47208160-47208216 (+)
AKR/J	MGP_AKRJ_G0002419	gene segment	Chr14:48917168-48917224 (+)
BALB/cJ	MGP_BALBcJ_G0002427	gene segment	Chr14:47176524-47176580 (+)
C3H/HeJ	MGP_C3HHeJ_G0002406	gene segment	Chr14:48597668-48597724 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002554	gene segment	Chr14:50581726-50581782 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002152	gene segment	Chr14:45620942-45620998 (+)
CAST/EiJ	MGP_CASTEiJ_G0002368	gene segment	Chr14:44829321-44829377 (+)
CBA/J	MGP_CBAJ_G0002397	gene segment	Chr14:52072294-52072350 (+)
DBA/2J	MGP_DBA2J_G0002402	gene segment	Chr14:46951881-46951937 (+)
FVB/NJ	MGP_FVBNJ_G0002416	gene segment	Chr14:46406630-46406686 (+)
LP/J	MGP_LPJ_G0002456	gene segment	Chr14:49141270-49141326 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002386	gene segment	Chr14:51516445-51516501 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002549	gene segment	Chr14:48098884-48098940 (+)
PWK/PhJ	MGP_PWKPhJ_G0002329	gene segment	Chr14:43475555-43475611 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002281	gene segment	Chr14:44075852-44075908 (+)
WSB/EiJ	MGP_WSBEiJ_G0002395	gene segment	Chr14:48389558-48389614 (+)

Homology

• Gene Tree
  Traj31
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj31
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076898 (Evidence)
• NCBI Gene
  100124358

Representative Sequences			Length	Strain/Species
genomic	100124358	NCBI Gene Model | MGI Sequence Detail	57	C57BL/6J
polypeptide	A0A0G2JDF0	UniProt | EBI | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61