Mir3109 Gene Detail

Summary

• Symbol
  Mir3109
• Name
  microRNA 3109
• Synonyms
  mmu-mir-3109

• Feature Type
  miRNA gene
• IDs
  MGI:4834328
  NCBI Gene: 100526560
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:69364226-69364313 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 38.58 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4834328	miRNA gene	Chr9:69364226-69364313 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009217	miRNA gene	Chr9:69450831-69450918 (+)
A/J	MGP_AJ_G0009198	miRNA gene	Chr9:67064057-67064144 (+)
AKR/J	MGP_AKRJ_G0009187	miRNA gene	Chr9:68654376-68654463 (+)
BALB/cJ	MGP_BALBcJ_G0009183	miRNA gene	Chr9:66791648-66791735 (+)
C3H/HeJ	MGP_C3HHeJ_G0009123	miRNA gene	Chr9:69160739-69160826 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009424	miRNA gene	Chr9:71310017-71310104 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0008954	miRNA gene	Chr9:69411729-69411816 (+)
CBA/J	MGP_CBAJ_G0009090	miRNA gene	Chr9:73811417-73811504 (+)
DBA/2J	MGP_DBA2J_G0009120	miRNA gene	Chr9:66819051-66819138 (+)
FVB/NJ	MGP_FVBNJ_G0009137	miRNA gene	Chr9:66134459-66134546 (+)
LP/J	MGP_LPJ_G0009215	miRNA gene	Chr9:69714153-69714240 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009104	miRNA gene	Chr9:74924208-74924295 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009394	miRNA gene	Chr9:68791572-68791659 (+)
PWK/PhJ	MGP_PWKPhJ_G0008880	miRNA gene	Chr9:67033310-67033397 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008720	miRNA gene	Chr9:69099934-69100021 (+)
WSB/EiJ	MGP_WSBEiJ_G0009050	miRNA gene	Chr9:68684399-68684486 (+)

Homology

• Gene Tree
  Mir3109
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir3109
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093042 (Evidence)
• NCBI Gene
  100526560

Representative Sequences			Length	Strain/Species
genomic	100526560	NCBI Gene Model | MGI Sequence Detail	88	C57BL/6J
transcript	NR_037296	RefSeq | MGI Sequence Detail	88	ZRU/MplStud

Other Database
Links

miRBase

MI0014106

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4