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Trav9d-4 Gene Detail
Summary
  • Symbol
    Trav9d-4
  • Name
    T cell receptor alpha variable 9D-4
  • Feature Type
    gene segment
  • IDs
    MGI:4889087
    NCBI Gene: 667574
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53220913-53221227 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.17 cM
Strain
Comparison
more
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4889087
 gene segment Chr14:53220658-53221317 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002536
 gene segment Chr14:46922739-47180057 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0002508
 gene segment Chr14:46172858-46541796 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002636
 gene segment Chr14:49420695-49421388 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002471
 gene segment Chr14:50370303-50821208 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002629
 gene segment Chr14:46711163-46711854 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0002445
 gene segment Chr10:32549202-32549852 (+)



Homology
more
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Vertebrate Orthologs
    17
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Synonyms
    TCRAV1S1, TCRAV8S1, TRAV81
  • Links
    NCBI Gene ID: 28685
    UniProt: A0A0A6YYK1

  • Chr Location
    14q11.2; chr14:21797287-21797886 (+)  GRCh38
  • Human Ortholog
    TRAV8-3, T cell receptor alpha variable 8-3
  • Synonyms
    TCRAV1S4, TCRAV8S3, TRAV83
  • Links
    NCBI Gene ID: 28683
    UniProt: A0A0A6YYJ7

  • Chr Location
    14q11.2; chr14:21852558-21853006 (+)  GRCh38
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    19
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 667574 NCBI Gene Model | MGI Sequence Detail 315 C57BL/6J ±  kb
transcript BC139214 GenBank | ENA | DDBJ | MGI Sequence Detail 1601 Not Specified  
polypeptide A0A0G2JG37 UniProt | EBI | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 6
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory