Gm17250 Gene Detail

Summary

• Symbol
  Gm17250
• Name
  predicted gene, 17250

• Feature Type
  lncRNA gene
• IDs
  MGI:4936884
  NCBI Gene: 228025
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:71564854-71580884 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 42.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  409 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936884	lncRNA gene	Chr2:71564854-71580884 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  14 phenotype references
  

• All Mutations and Alleles
  47
• Chemically induced (other)
  1
• Gene trapped
  40
• Targeted
  6
• Genomic Mutations
  7 involving Gm17250
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  4

• NCBI Gene
  228025

Representative Sequences			Length	Strain/Species
genomic	228025	NCBI Gene Model | MGI Sequence Detail	16031	C57BL/6J
transcript	AK086439	GenBank | ENA | DDBJ | MGI Sequence Detail	1011	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 21

  Phenotypes 14
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

TSS for Gm17250:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24497	Chr2:71580650-71580665 (-)	226 bp
Tssr24496	Chr2:71580427-71580439 (-)	451 bp
Tssr24495	Chr2:71576084-71576116 (-)	4,784 bp