Gm17399 Gene Detail

Summary

• Symbol
  Gm17399
• Name
  predicted gene, 17399

• Feature Type
  lncRNA gene
• IDs
  MGI:4937033
  NCBI Gene: 100502695
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:117979299-117999444 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 69.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  745 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937033	lncRNA gene	Chr9:117979299-117999450 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007516	lincRNA gene	Chr9:120803030-120823215 (+)
A/J	MGP_AJ_G0007511	lincRNA gene	Chr9:116349545-116369660 (+)
AKR/J	MGP_AKRJ_G0007483	lincRNA gene	Chr9:119335521-119355623 (+)
BALB/cJ	MGP_BALBcJ_G0007488	lincRNA gene	Chr9:116196434-116217076 (+)
C3H/HeJ	MGP_C3HHeJ_G0007433	lincRNA gene	Chr9:119830929-119853496 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007660	lincRNA gene	Chr9:124114306-124135061 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006841	lincRNA gene	Chr9:113564905-113585848 (+)
CAST/EiJ	MGP_CASTEiJ_G0007337	lincRNA gene	Chr9:119759287-119780069 (+)
CBA/J	MGP_CBAJ_G0007414	lincRNA gene	Chr9:128756033-128778978 (+)
DBA/2J	MGP_DBA2J_G0007440	lincRNA gene	Chr9:115797944-115818334 (+)
FVB/NJ	MGP_FVBNJ_G0007456	lincRNA gene	Chr9:114633346-114653489 (+)
LP/J	MGP_LPJ_G0007521	lincRNA gene	Chr9:121148799-121170292 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007437	lincRNA gene	Chr9:129835574-129857550 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007665	lincRNA gene	Chr9:119723906-119746346 (+)
PWK/PhJ	MGP_PWKPhJ_G0007277	lincRNA gene	Chr9:116165417-116186242 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007182	lincRNA gene	Chr9:119816653-119840799 (+)
WSB/EiJ	MGP_WSBEiJ_G0007397	lincRNA gene	Chr9:119628164-119648078 (+)

Homology

• Gene Tree
  Gm17399
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000097402 (Evidence)
• NCBI Gene
  100502695

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097402	Ensembl Gene Model | MGI Sequence Detail	20146	C57BL/6J
transcript	ENSMUST00000181824	Ensembl | MGI Sequence Detail	1181	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;