Gm17415 Pseudogene Detail

Summary

• Symbol
  Gm17415
• Name
  predicted gene, 17415

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:4937049
  NCBI Gene: 108167670
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:93349422-93350210 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 47.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937049	pseudogene	Chr1:93349395-93350259 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010247	pseudogene	Chr1:95046759-95047547 (+)
A/J	MGP_AJ_G0010241	pseudogene	Chr1:91639436-91640224 (+)
AKR/J	MGP_AKRJ_G0010212	pseudogene	Chr1:94348535-94349323 (+)
BALB/cJ	MGP_BALBcJ_G0010217	pseudogene	Chr1:91822181-91822969 (+)
C3H/HeJ	MGP_C3HHeJ_G0010154	pseudogene	Chr1:94601111-94601899 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010486	pseudogene	Chr1:98661002-98661790 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0009980	pseudogene	Chr1:93930512-93931300 (+)
CBA/J	MGP_CBAJ_G0010123	pseudogene	Chr1:101853956-101854744 (+)
DBA/2J	MGP_DBA2J_G0010155	pseudogene	Chr1:90835021-90836339 (+)
FVB/NJ	MGP_FVBNJ_G0010174	pseudogene	Chr1:89911258-89912046 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010135	pseudogene	Chr1:104955757-104956545 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010452	pseudogene	Chr1:94360972-94362984 (+)
PWK/PhJ	MGP_PWKPhJ_G0009884	pseudogene	Chr1:90274764-90275821 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17415
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17415
• Incidental Mutations
  APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000090489 (Evidence)
• NCBI Gene
  108167670

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090489	Ensembl Gene Model | MGI Sequence Detail	789	C57BL/6J
transcript	ENSMUST00000096427	Ensembl | MGI Sequence Detail	789	Not Applicable
polypeptide	XP_036011877	RefSeq | MGI Sequence Detail	261	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45