Gm17455 Gene Detail

Summary

• Symbol
  Gm17455
• Name
  predicted gene, 17455

• Feature Type
  protein coding gene
• IDs
  MGI:4937089
  NCBI Gene: 100302688
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:60235643-60239338 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 30.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  267 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937089	protein coding gene	Chr10:60235505-60239338 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017270	protein coding gene	Chr10:59626028-59629850 (+)
A/J	MGP_AJ_G0017248	protein coding gene	Chr10:57884516-57888338 (+)
AKR/J	MGP_AKRJ_G0017208	protein coding gene	Chr10:59386865-59390687 (+)
BALB/cJ	MGP_BALBcJ_G0017208	protein coding gene	Chr10:57964603-57968421 (+)
C3H/HeJ	MGP_C3HHeJ_G0017031	protein coding gene	Chr10:59304149-59307967 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017666	protein coding gene	Chr10:61766823-61770649 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015357	protein coding gene	Chr10:54872891-54876528 (+)
CAST/EiJ	MGP_CASTEiJ_G0016602	protein coding gene	Chr10:59266186-59270014 (+)
CBA/J	MGP_CBAJ_G0017003	protein coding gene	Chr10:63998395-64002209 (+)
DBA/2J	MGP_DBA2J_G0017108	protein coding gene	Chr10:57183614-57187302 (+)
FVB/NJ	MGP_FVBNJ_G0017102	protein coding gene	Chr10:56419701-56423494 (+)
LP/J	MGP_LPJ_G0017183	protein coding gene	Chr10:60027674-60033328 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017130	protein coding gene	Chr10:66477621-66481439 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017704	protein coding gene	Chr10:59199095-59202917 (+)
PWK/PhJ	MGP_PWKPhJ_G0016385	protein coding gene	Chr10:56993927-56997719 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016168	protein coding gene	Chr10:58530938-58535425 (+)
WSB/EiJ	MGP_WSBEiJ_G0016666	protein coding gene	Chr10:59123619-59127346 (+)

Homology

• Human Ortholog
  C10orf105, chromosome 10 open reading frame 105

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C10orf105, chromosome 10 open reading frame 105
  
• Links
  HGNC:20304

  NCBI Gene ID: 414152

  neXtProt AC: NX_Q8TEF2

  UniProt: Q8TEF2

  
  
• Chr Location
  10q22.1; chr10:71711701-71737850 (-)  GRCh38

---

• MGI Vertebrate Homology
  Gm17455 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: C10orf105
• Gene Tree
  Gm17455
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17455
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  10
• UniProt
  3
• CCDS
  CCDS48570.1

• Ensembl
  ENSMUSG00000090439 (Evidence)
• NCBI Gene
  100302688

Representative Sequences			Length	Strain/Species
genomic	100302688	NCBI Gene Model | MGI Sequence Detail	3696	C57BL/6J
transcript	NM_001399669	RefSeq | MGI Sequence Detail	763	C57BL/6
polypeptide	NP_001386600	RefSeq | MGI Sequence Detail	128	C57BL/6

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR039954 Protein of unknown function DUF5527

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm17455:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93633	Chr10:60235528-60235551 (+)	-103 bp
Tssr93634	Chr10:60235581-60235584 (+)	-60 bp
Tssr93635	Chr10:60235628-60235655 (+)	-1 bp
Tssr93636	Chr10:60236532-60236543 (+)	895 bp