Traj54 Pseudogene Detail

Summary

• Symbol
  Traj54
• Name
  T cell receptor alpha joining 54
• Synonyms
  Gm17479

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4937113
  NCBI Gene: 100124333
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54399447-54399500 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937113	pseudogenic gene segment	Chr14:54399447-54399500 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002502	pseudogenic gene segment	Chr14:48090031-48090084 (+)
A/J	MGP_AJ_G0002476	pseudogenic gene segment	Chr14:47182175-47182228 (+)
AKR/J	MGP_AKRJ_G0002462	pseudogenic gene segment	Chr14:48888412-48888465 (+)
BALB/cJ	MGP_BALBcJ_G0002470	pseudogenic gene segment	Chr14:47147090-47147143 (+)
C3H/HeJ	MGP_C3HHeJ_G0002449	pseudogenic gene segment	Chr14:48570785-48570838 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002597	pseudogenic gene segment	Chr14:50555470-50555523 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002195	pseudogenic gene segment	Chr14:45595220-45595333 (+)
CAST/EiJ	MGP_CASTEiJ_G0002411	pseudogenic gene segment	Chr14:44803568-44803674 (+)
CBA/J	MGP_CBAJ_G0002440	pseudogenic gene segment	Chr14:52046652-52046705 (+)
DBA/2J	MGP_DBA2J_G0002445	pseudogenic gene segment	Chr14:46920541-46920594 (+)
FVB/NJ	MGP_FVBNJ_G0002459	pseudogenic gene segment	Chr14:46380943-46380996 (+)
LP/J	MGP_LPJ_G0002501	pseudogenic gene segment	Chr14:49114363-49114416 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002429	pseudogenic gene segment	Chr14:51489937-51489990 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002592	pseudogenic gene segment	Chr14:48072377-48072430 (+)
PWK/PhJ	MGP_PWKPhJ_G0002372	pseudogenic gene segment	Chr14:43449174-43449227 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002324	pseudogenic gene segment	Chr14:44048595-44048648 (+)
WSB/EiJ	MGP_WSBEiJ_G0002438	pseudogenic gene segment	Chr14:48363119-48363172 (+)

Homology

• Gene Tree
  Traj54
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Traj54
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000091326 (Evidence)
• NCBI Gene
  100124333

Representative Sequences			Length	Strain/Species
genomic	100124333	NCBI Gene Model | MGI Sequence Detail	54	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61