Gm17511 Pseudogene Detail

Summary

• Symbol
  Gm17511
• Name
  predicted gene, 17511

• Feature Type
  pseudogene
• IDs
  MGI:4937145
  NCBI Gene: 100502641
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:126885216-126885557 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 69.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937145	pseudogene	Chr7:126885172-126885639 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012595	pseudogene	Chr4:30449413-30449754 (+)
A/J	MGP_AJ_G0014032	pseudogene	Chr7:128119629-128119970 (-)
AKR/J	MGP_AKRJ_G0013966	pseudogene	Chr7:131379829-131380170 (-)
BALB/cJ	MGP_BALBcJ_G0013989	pseudogene	Chr7:127792675-127793016 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014421	pseudogene	Chr7:136738274-136738615 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013479	pseudogene	Chr7:123111496-123111837 (-)
CBA/J	MGP_CBAJ_G0013804	pseudogene	Chr7:141353454-141357214 (-)
DBA/2J	MGP_DBA2J_G0013881	pseudogene	Chr7:126092779-126093120 (-)
FVB/NJ	MGP_FVBNJ_G0013882	pseudogene	Chr7:125947752-125948093 (-)
LP/J	MGP_LPJ_G0013961	pseudogene	Chr7:133087842-133088183 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013908	pseudogene	Chr7:142482539-142483326 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014387	pseudogene	Chr7:130394886-130395227 (-)
PWK/PhJ	MGP_PWKPhJ_G0013380	pseudogene	Chr8:103326444-103326901 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013066	pseudogene	Chr7:117229709-117230050 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17511
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000090460 (Evidence)
• NCBI Gene
  100502641

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090460	Ensembl Gene Model | MGI Sequence Detail	342	C57BL/6J
transcript	ENSMUST00000172206	Ensembl | MGI Sequence Detail	342	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm17511:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr74987	Chr7:126885668-126885669 (-)	-112 bp