Traj36 Pseudogene Detail

Summary

• Symbol
  Traj36
• Name
  T cell receptor alpha joining 36
• Synonyms
  Gm17610

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4937244
  NCBI Gene: 100124353
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54419859-54419921 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937244	pseudogenic gene segment	Chr14:54419859-54419921 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002504	pseudogenic gene segment	Chr14:48110803-48110867 (+)
A/J	MGP_AJ_G0002478	pseudogenic gene segment	Chr14:47202692-47202756 (+)
AKR/J	MGP_AKRJ_G0002464	pseudogenic gene segment	Chr14:48910117-48910182 (+)
BALB/cJ	MGP_BALBcJ_G0002472	pseudogenic gene segment	Chr14:47171114-47171178 (+)
C3H/HeJ	MGP_C3HHeJ_G0002451	pseudogenic gene segment	Chr14:48592193-48592257 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002599	pseudogenic gene segment	Chr14:50576263-50576325 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002197	pseudogenic gene segment	Chr14:45615469-45615531 (+)
CAST/EiJ	MGP_CASTEiJ_G0002413	pseudogenic gene segment	Chr14:44823892-44823955 (+)
CBA/J	MGP_CBAJ_G0002442	pseudogenic gene segment	Chr14:52066888-52066952 (+)
DBA/2J	MGP_DBA2J_G0002447	pseudogenic gene segment	Chr14:46946439-46946503 (+)
FVB/NJ	MGP_FVBNJ_G0002461	pseudogenic gene segment	Chr14:46401194-46401259 (+)
LP/J	MGP_LPJ_G0002503	pseudogenic gene segment	Chr14:49135846-49135910 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002431	pseudogenic gene segment	Chr14:51511032-51511097 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002594	pseudogenic gene segment	Chr14:48093464-48093528 (+)
PWK/PhJ	MGP_PWKPhJ_G0002374	pseudogenic gene segment	Chr14:43469933-43469997 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002326	pseudogenic gene segment	Chr14:44069017-44069086 (+)
WSB/EiJ	MGP_WSBEiJ_G0002440	pseudogenic gene segment	Chr14:48383365-48383428 (+)

Homology

• Gene Tree
  Traj36
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Traj36
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090494 (Evidence)
• NCBI Gene
  100124353

Representative Sequences			Length	Strain/Species
genomic	100124353	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj36:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125578	Chr14:54419087-54419090 (+)	-770 bp