Gm17638 Gene Detail

Summary

• Symbol
  Gm17638
• Name
  predicted gene, 17638

• Feature Type
  lncRNA gene
• IDs
  MGI:4937272
  NCBI Gene: 100504021
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:77845874-77851326 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 36.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  301 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937272	lncRNA gene	Chr15:77845874-77851326 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005606	lincRNA gene	Chr15:78108998-78114450 (+)
A/J	MGP_AJ_G0005593	lincRNA gene	Chr15:75393458-75398910 (+)
AKR/J	MGP_AKRJ_G0005572	lincRNA gene	Chr15:77473189-77478641 (+)
BALB/cJ	MGP_BALBcJ_G0005573	lincRNA gene	Chr15:75406386-75411838 (+)
C3H/HeJ	MGP_C3HHeJ_G0005520	lincRNA gene	Chr15:77550803-77556255 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005731	lincRNA gene	Chr15:81174718-81180170 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005096	lincRNA gene	Chr15:71961463-71966984 (+)
CAST/EiJ	MGP_CASTEiJ_G0005464	lincRNA gene	Chr15:78144750-78150210 (+)
CBA/J	MGP_CBAJ_G0005510	lincRNA gene	Chr15:83688940-83694392 (+)
DBA/2J	MGP_DBA2J_G0005525	lincRNA gene	Chr15:74890469-74895921 (+)
FVB/NJ	MGP_FVBNJ_G0005552	lincRNA gene	Chr15:73879100-73884552 (+)
LP/J	MGP_LPJ_G0005609	lincRNA gene	Chr15:78295297-78300749 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005537	lincRNA gene	Chr15:88885487-88890939 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005731	lincRNA gene	Chr15:77570506-77575958 (+)
PWK/PhJ	MGP_PWKPhJ_G0005413	lincRNA gene	Chr15:74870317-74875764 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005332	lincRNA gene	Chr15:77317073-77322549 (+)
WSB/EiJ	MGP_WSBEiJ_G0005514	lincRNA gene	Chr15:77886137-77891595 (+)

Homology

• Gene Tree
  Gm17638
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm17638
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097057 (Evidence)
• NCBI Gene
  100504021

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097057	Ensembl Gene Model | MGI Sequence Detail	5453	C57BL/6J
transcript	ENSMUST00000181255	Ensembl | MGI Sequence Detail	4343	Not Applicable

References

• Summaries
  All 20

  Phenotypes 18
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm17638:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131889	Chr15:77850873-77850896 (+)	5,011 bp