Gm17055 Gene Detail

Summary

• Symbol
  Gm17055
• Name
  predicted gene 17055

• Feature Type
  lncRNA gene
• IDs
  MGI:4937882
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:108633878-108636498 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 49.84 cM

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937882	lncRNA gene	Chr6:108633878-108636498 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015644	unclassified non-coding RNA gene	Chr6:110931275-110935009 (+)
A/J	MGP_AJ_G0015620	unclassified non-coding RNA gene	Chr6:106729410-106732007 (+)
AKR/J	MGP_AKRJ_G0015583	unclassified non-coding RNA gene	Chr6:109607730-109610323 (+)
BALB/cJ	MGP_BALBcJ_G0015582	unclassified non-coding RNA gene	Chr6:106657919-106661385 (+)
C3H/HeJ	MGP_C3HHeJ_G0015398	unclassified non-coding RNA gene	Chr6:74749287-74751879 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016035	unclassified non-coding RNA gene	Chr6:113842797-113845449 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013768	unclassified non-coding RNA gene	Chr6:104021663-104024317 (+)
CAST/EiJ	MGP_CASTEiJ_G0014960	unclassified non-coding RNA gene	Chr6:109977517-109980145 (+)
CBA/J	MGP_CBAJ_G0015385	unclassified non-coding RNA gene	Chr6:118226659-118229252 (+)
DBA/2J	MGP_DBA2J_G0015479	unclassified non-coding RNA gene	Chr6:105866931-105869577 (+)
FVB/NJ	MGP_FVBNJ_G0015486	unclassified non-coding RNA gene	Chr6:104899153-104901730 (+)
LP/J	MGP_LPJ_G0015560	unclassified non-coding RNA gene	Chr6:110992611-110995245 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015509	unclassified non-coding RNA gene	Chr6:122454530-122457147 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016077	unclassified non-coding RNA gene	Chr6:109549801-109552398 (+)
PWK/PhJ	MGP_PWKPhJ_G0014743	unclassified non-coding RNA gene	Chr6:104785747-104788290 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014531	unclassified non-coding RNA gene	Chr6:108341487-108344077 (+)
WSB/EiJ	MGP_WSBEiJ_G0015064	unclassified non-coding RNA gene	Chr6:110093406-110096027 (+)

Homology

• Gene Tree
  Gm17055
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm17055
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000090576 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090576	Ensembl Gene Model | MGI Sequence Detail	2621	C57BL/6J
transcript	ENSMUST00000204397	Ensembl | MGI Sequence Detail	2493	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Gm17055:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58067	Chr6:108635571-108635582 (+)	1,699 bp
Tssr58068	Chr6:108635615-108635631 (+)	1,745 bp
Tssr58069	Chr6:108635720-108635731 (+)	1,848 bp