Gm17057 Gene Detail

Summary

• Symbol
  Gm17057
• Name
  predicted gene 17057

• Feature Type
  lncRNA gene
• IDs
  MGI:4937884
  NCBI Gene: 102638508
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:99716901-99732451 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 56.13 cM

Strain
Comparison

• SNPs within 2kb
  557 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937884	lncRNA gene	Chr15:99715790-99733902 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003311	antisense lncRNA gene	Chr15:101706579-101724534 (+)
A/J	MGP_AJ_G0003287	antisense lncRNA gene	Chr15:97652995-97667850 (+)
AKR/J	MGP_AKRJ_G0003270	antisense lncRNA gene	Chr15:100648420-100663417 (+)
BALB/cJ	MGP_BALBcJ_G0003276	antisense lncRNA gene	Chr15:97822475-97838038 (+)
C3H/HeJ	MGP_C3HHeJ_G0003229	antisense lncRNA gene	Chr15:100716033-100730888 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003418	antisense lncRNA gene	Chr15:105489983-105506343 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002939	antisense lncRNA gene	Chr15:93526263-93541296 (+)
CAST/EiJ	MGP_CASTEiJ_G0003195	antisense lncRNA gene	Chr15:101587225-101602091 (+)
CBA/J	MGP_CBAJ_G0003226	antisense lncRNA gene	Chr15:109094504-109109495 (+)
DBA/2J	MGP_DBA2J_G0003231	antisense lncRNA gene	Chr15:97077890-97094554 (+)
FVB/NJ	MGP_FVBNJ_G0003250	antisense lncRNA gene	Chr15:96077528-96092630 (+)
LP/J	MGP_LPJ_G0003304	antisense lncRNA gene	Chr15:101850362-101864982 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003239	antisense lncRNA gene	Chr15:112962932-112977934 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003420	antisense lncRNA gene	Chr15:100765818-100780813 (+)
PWK/PhJ	MGP_PWKPhJ_G0003153	antisense lncRNA gene	Chr15:97220081-97235711 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003099	antisense lncRNA gene	Chr15:100603365-100620761 (+)
WSB/EiJ	MGP_WSBEiJ_G0003229	antisense lncRNA gene	Chr15:101277970-101294203 (+)

Homology

• Gene Tree
  Gm17057
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm17057
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090500 (Evidence)
• NCBI Gene
  102638508

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090500	Ensembl Gene Model | MGI Sequence Detail	15551	C57BL/6J
transcript	ENSMUST00000169887	Ensembl | MGI Sequence Detail	591	Not Applicable

References

• Summaries
  All 25

  Diseases 1

  Phenotypes 21
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm17057:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133072	Chr15:99719011-99719051 (+)	2,130 bp