Gm17058 Gene Detail

Summary

• Symbol
  Gm17058
• Name
  predicted gene 17058

• Feature Type
  lncRNA gene
• IDs
  MGI:4937885
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:99663872-99680213 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 56.13 cM

Strain
Comparison

• SNPs within 2kb
  489 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937885	lncRNA gene	Chr15:99663872-99680213 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003310	antisense lncRNA gene	Chr15:101650721-101668008 (+)
A/J	MGP_AJ_G0003286	antisense lncRNA gene	Chr15:97594115-97612309 (+)
AKR/J	MGP_AKRJ_G0003269	antisense lncRNA gene	Chr15:100593250-100609537 (+)
BALB/cJ	MGP_BALBcJ_G0003275	antisense lncRNA gene	Chr15:97766777-97783742 (+)
C3H/HeJ	MGP_C3HHeJ_G0003228	antisense lncRNA gene	Chr15:100657011-100675512 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003417	antisense lncRNA gene	Chr15:105430181-105448226 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003194	antisense lncRNA gene	Chr15:101526417-101547317 (+)
CBA/J	MGP_CBAJ_G0003225	antisense lncRNA gene	Chr15:109026280-109045898 (+)
DBA/2J	MGP_DBA2J_G0003230	antisense lncRNA gene	Chr15:97022853-97039650 (+)
FVB/NJ	MGP_FVBNJ_G0003249	antisense lncRNA gene	Chr15:96018411-96035469 (+)
LP/J	MGP_LPJ_G0003303	antisense lncRNA gene	Chr15:101794430-101810528 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003238	antisense lncRNA gene	Chr15:112901213-112920043 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003419	antisense lncRNA gene	Chr15:100706773-100723961 (+)
PWK/PhJ	MGP_PWKPhJ_G0003152	antisense lncRNA gene	Chr15:97163880-97180654 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003098	antisense lncRNA gene	Chr15:100546411-100564105 (+)
WSB/EiJ	MGP_WSBEiJ_G0003228	antisense lncRNA gene	Chr15:101219910-101236107 (+)

Homology

• Gene Tree
  Gm17058
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17058
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000090406 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090406	Ensembl Gene Model | MGI Sequence Detail	16342	C57BL/6J
transcript	ENSMUST00000168951	Ensembl | MGI Sequence Detail	928	Not Applicable

References

• Summaries
  All 19

  Phenotypes 17
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27