Gm17060 Pseudogene Detail

Summary

• Symbol
  Gm17060
• Name
  predicted gene 17060

• Feature Type
  pseudogene
• IDs
  MGI:4937887
  NCBI Gene: 100416089
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:49400995-49401818 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 23.88 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937887	pseudogene	Chr6:49400683-49401901 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013452	pseudogene	Chr6:48446879-48447702 (-)
A/J	MGP_AJ_G0013436	pseudogene	Chr6:46236928-46237751 (-)
AKR/J	MGP_AKRJ_G0013400	pseudogene	Chr6:47868108-47868931 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013264	pseudogene	Chr6:47878224-47879047 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013798	pseudogene	Chr6:49587677-49588500 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012972	pseudogene	Chr6:47587447-47588270 (-)
CBA/J	MGP_CBAJ_G0013233	pseudogene	Chr6:51661762-51662585 (-)
DBA/2J	MGP_DBA2J_G0013317	pseudogene	Chr6:46141361-46142184 (-)
FVB/NJ	MGP_FVBNJ_G0013313	pseudogene	Chr6:45779498-45780321 (-)
LP/J	MGP_LPJ_G0013387	pseudogene	Chr6:48424066-48424889 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013331	pseudogene	Chr6:54403660-54404483 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013794	pseudogene	Chr6:47750235-47751058 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013015	pseudogene	Chr6:47728303-47729126 (-)

Homology

• Gene Tree
  Gm17060
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000090624 (Evidence)
• NCBI Gene
  100416089

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090624	Ensembl Gene Model | MGI Sequence Detail	824	C57BL/6J
transcript	ENSMUST00000172394	Ensembl | MGI Sequence Detail	824	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm17060:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60891	Chr6:49401902-49401903 (-)	-85 bp