Gm17065 Pseudogene Detail

Summary

• Symbol
  Gm17065
• Name
  predicted gene 17065

• Feature Type
  pseudogene
• IDs
  MGI:4937892
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:60879124-60879362 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 36.08 cM

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937892	pseudogene	Chr16:60879124-60879362 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011298	pseudogene	Chr16:60396218-60396456 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011221	pseudogene	Chr13:2119319-2119542 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012378	pseudogene	Chr3:139824317-139824558 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011526	pseudogene	Chr16:59738783-59739021 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011790	pseudogene	Chr3:47620426-47620667 (+)

Homology

• Gene Tree
  Gm17065
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8

• Ensembl
  ENSMUSG00000090882 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090882	Ensembl Gene Model | MGI Sequence Detail	239	C57BL/6J
transcript	ENSMUST00000165245	Ensembl | MGI Sequence Detail	239	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;