Gm17089 Gene Detail

Summary

• Symbol
  Gm17089
• Name
  predicted gene 17089

• Feature Type
  lncRNA gene
• IDs
  MGI:4937916
  NCBI Gene: 118027456
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:134210121-134220674 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 64.77 cM

Strain
Comparison

• SNPs within 2kb
  464 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937916	lncRNA gene	Chr6:134210106-134220682 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004372	antisense lncRNA gene	Chr6:138478579-138489073 (-)
A/J	MGP_AJ_G0004349	antisense lncRNA gene	Chr6:133068483-133079156 (-)
AKR/J	MGP_AKRJ_G0004331	antisense lncRNA gene	Chr6:137096149-137106719 (-)
BALB/cJ	MGP_BALBcJ_G0004335	antisense lncRNA gene	Chr6:132875367-132885925 (-)
C3H/HeJ	MGP_C3HHeJ_G0004284	antisense lncRNA gene	Chr6:137149546-137160096 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004485	antisense lncRNA gene	Chr6:142241998-142252551 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003945	antisense lncRNA gene	Chr6:132209932-132220851 (-)
CAST/EiJ	MGP_CASTEiJ_G0004244	antisense lncRNA gene	Chr6:136528646-136539180 (-)
CBA/J	MGP_CBAJ_G0004278	antisense lncRNA gene	Chr6:147556713-147567261 (-)
DBA/2J	MGP_DBA2J_G0004293	antisense lncRNA gene	Chr6:131914345-131924911 (-)
FVB/NJ	MGP_FVBNJ_G0004310	antisense lncRNA gene	Chr6:130833430-130844418 (-)
LP/J	MGP_LPJ_G0004372	antisense lncRNA gene	Chr6:138594675-138605235 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004301	antisense lncRNA gene	Chr6:151628708-151639280 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004482	antisense lncRNA gene	Chr6:136835093-136845640 (-)
PWK/PhJ	MGP_PWKPhJ_G0004197	antisense lncRNA gene	Chr6:130384737-130395411 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004139	antisense lncRNA gene	Chr6:134985524-134997109 (-)
WSB/EiJ	MGP_WSBEiJ_G0004283	antisense lncRNA gene	Chr6:137465753-137476319 (-)

Homology

• Gene Tree
  Gm17089
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092134 (Evidence)
• NCBI Gene
  118027456

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092134	Ensembl Gene Model | MGI Sequence Detail	10554	C57BL/6J
transcript	ENSMUST00000171098	Ensembl | MGI Sequence Detail	1394	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm17089:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63716	Chr6:134220485-134220490 (-)	186 bp