Gm17112 Gene Detail

Summary

• Symbol
  Gm17112
• Name
  predicted gene 17112

• Feature Type
  lncRNA gene
• IDs
  MGI:4937939
  NCBI Gene: 118568758
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137530685-137538980 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.54 cM

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937939	lncRNA gene	Chr5:137530685-137541893 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004204	antisense lncRNA gene	Chr5:142300507-142308794 (+)
A/J	MGP_AJ_G0004183	antisense lncRNA gene	Chr5:136093455-136101747 (+)
AKR/J	MGP_AKRJ_G0004164	antisense lncRNA gene	Chr5:140514831-140523114 (+)
BALB/cJ	MGP_BALBcJ_G0004169	antisense lncRNA gene	Chr5:137463052-137471333 (+)
C3H/HeJ	MGP_C3HHeJ_G0004117	antisense lncRNA gene	Chr5:141164207-141173741 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004317	antisense lncRNA gene	Chr5:147557979-147566286 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003793	antisense lncRNA gene	Chr5:130335814-130344305 (+)
CAST/EiJ	MGP_CASTEiJ_G0004079	antisense lncRNA gene	Chr5:140569014-140580335 (+)
CBA/J	MGP_CBAJ_G0004111	antisense lncRNA gene	Chr5:153425955-153435148 (+)
DBA/2J	MGP_DBA2J_G0004127	antisense lncRNA gene	Chr5:135996858-136005190 (+)
FVB/NJ	MGP_FVBNJ_G0004143	antisense lncRNA gene	Chr5:135206030-135214315 (+)
LP/J	MGP_LPJ_G0004205	antisense lncRNA gene	Chr5:142758101-142766574 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004133	antisense lncRNA gene	Chr5:156251270-156259545 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004315	antisense lncRNA gene	Chr5:140368045-140376320 (+)
PWK/PhJ	MGP_PWKPhJ_G0004033	antisense lncRNA gene	Chr5:135084061-135092513 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003977	antisense lncRNA gene	Chr5:137930458-137938734 (+)
WSB/EiJ	MGP_WSBEiJ_G0004115	antisense lncRNA gene	Chr5:141094829-141103120 (+)

Homology

• Gene Tree
  Gm17112
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090873 (Evidence)
• NCBI Gene
  118568758

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090873	Ensembl Gene Model | MGI Sequence Detail	8296	C57BL/6J
transcript	ENSMUST00000163194	Ensembl | MGI Sequence Detail	432	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17112:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49337	Chr5:137529546-137529553 (+)	-1,135 bp