Gm17189 Gene Detail

Summary

• Symbol
  Gm17189
• Name
  predicted gene 17189

• Feature Type
  lncRNA gene
• IDs
  MGI:4938016
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:74655914-74672489 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 34.28 cM

Strain
Comparison

• SNPs within 2kb
  392 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938016	lncRNA gene	Chr15:74655914-74672489 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003292	antisense lncRNA gene	Chr15:74569993-74587299 (+)
A/J	MGP_AJ_G0003268	antisense lncRNA gene	Chr15:71912570-71929103 (+)
AKR/J	MGP_AKRJ_G0003251	antisense lncRNA gene	Chr15:73749642-73765929 (+)
BALB/cJ	MGP_BALBcJ_G0003257	antisense lncRNA gene	Chr15:71918803-71935324 (+)
C3H/HeJ	MGP_C3HHeJ_G0003210	antisense lncRNA gene	Chr15:73903010-73920038 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003399	antisense lncRNA gene	Chr15:77380748-77397044 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003176	antisense lncRNA gene	Chr15:74723378-74741069 (+)
CBA/J	MGP_CBAJ_G0003207	antisense lncRNA gene	Chr15:79919586-79939744 (+)
DBA/2J	MGP_DBA2J_G0003212	antisense lncRNA gene	Chr15:71503352-71521858 (+)
FVB/NJ	MGP_FVBNJ_G0003231	antisense lncRNA gene	Chr15:70553065-70569737 (+)
LP/J	MGP_LPJ_G0003285	antisense lncRNA gene	Chr15:74626411-74647941 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003220	antisense lncRNA gene	Chr15:85230999-85249286 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003401	antisense lncRNA gene	Chr15:74138853-74156868 (+)
PWK/PhJ	MGP_PWKPhJ_G0003133	antisense lncRNA gene	Chr15:71614084-71631512 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003079	antisense lncRNA gene	Chr15:74022358-74039135 (+)
WSB/EiJ	MGP_WSBEiJ_G0003210	antisense lncRNA gene	Chr15:74148166-74167110 (+)

Homology

• Gene Tree
  Gm17189
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  3
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm17189
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000091709 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091709	Ensembl Gene Model | MGI Sequence Detail	16576	C57BL/6J
transcript	ENSMUST00000163707	Ensembl | MGI Sequence Detail	1630	Not Applicable

References

• Summaries
  All 22

  Phenotypes 20
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm17189:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131587	Chr15:74655953-74655964 (+)	45 bp