Gm17200 Gene Detail

Summary

• Symbol
  Gm17200
• Name
  predicted gene 17200

• Feature Type
  lncRNA gene
• IDs
  MGI:4938027
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:123507161-123530111 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 74.33 cM

Strain
Comparison

• SNPs within 2kb
  540 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938027	lncRNA gene	Chr9:123507161-123530111 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015766	unclassified non-coding RNA gene	Chr9:126735509-126760326 (+)
A/J	MGP_AJ_G0015743	unclassified non-coding RNA gene	Chr9:121886838-121911695 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0015704	unclassified non-coding RNA gene	Chr9:121820078-121844931 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0016159	unclassified non-coding RNA gene	Chr9:130236341-130259875 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0015609	unclassified non-coding RNA gene	Chr9:120234075-120255731 (+)
LP/J	MGP_LPJ_G0015684	unclassified non-coding RNA gene	Chr9:127139763-127161571 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015632	unclassified non-coding RNA gene	Chr9:135787509-135826176 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016202	unclassified non-coding RNA gene	Chr9:125614099-125638831 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17200
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000090608 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090608	Ensembl Gene Model | MGI Sequence Detail	22951	C57BL/6J
transcript	ENSMUST00000170214	Ensembl | MGI Sequence Detail	2022	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;