Lgals1-ps2 Pseudogene Detail

Summary

• Symbol
  Lgals1-ps2
• Name
  lectin, galactose binding, soluble 1, pseudogene 2
• Synonyms
  Gm17209

• Feature Type
  pseudogene
• IDs
  MGI:4938036
  NCBI Gene: 115488490
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:79139774-79140292 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 37.70 cM

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938036	pseudogene	Chr15:79139768-79140295 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0039669	pseudogene	Chr15:76771650-76772166 (+)
AKR/J	MGP_AKRJ_G0039595	pseudogene	Chr15:78904073-78904589 (+)
BALB/cJ	MGP_BALBcJ_G0039643	pseudogene	Chr15:76760841-76761357 (+)
C3H/HeJ	MGP_C3HHeJ_G0039305	pseudogene	Chr15:78897323-78897839 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040197	pseudogene	Chr15:82632546-82633064 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036840	pseudogene	Chr15:73253475-73253992 (+)
CAST/EiJ	MGP_CASTEiJ_G0038426	pseudogene	Chr15:79601411-79601923 (+)
CBA/J	MGP_CBAJ_G0039274	pseudogene	Chr15:85189610-85190126 (+)
DBA/2J	MGP_DBA2J_G0039466	pseudogene	Chr15:76249857-76250373 (+)
FVB/NJ	MGP_FVBNJ_G0039423	pseudogene	Chr15:75283098-75283614 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039427	pseudogene	Chr15:90337312-90337832 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040302	pseudogene	Chr15:78920560-78921883 (+)
PWK/PhJ	MGP_PWKPhJ_G0038100	pseudogene	Chr15:76260802-76261322 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037850	pseudogene	Chr15:78730158-78730676 (+)
WSB/EiJ	MGP_WSBEiJ_G0038658	pseudogene	Chr15:79305789-79306307 (+)

Homology

• Gene Tree
  Lgals1-ps2
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Lgals1-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000091135 (Evidence)
• NCBI Gene
  115488490

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091135	Ensembl Gene Model | MGI Sequence Detail	519	C57BL/6J
transcript	ENSMUST00000170221	Ensembl | MGI Sequence Detail	519	Not Applicable

References

• Summaries
  All 25

  Diseases 1

  Phenotypes 20
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27