Gm17225 Gene Detail

Summary

• Symbol
  Gm17225
• Name
  predicted gene 17225

• Feature Type
  lncRNA gene
• IDs
  MGI:4938052
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:126226530-126403057 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 55.97 cM

Strain
Comparison

• SNPs within 2kb
  6235 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	no annotation
129S1/SvImJ	MGP_129S1SvImJ_G0003831	antisense lncRNA gene	Chr3:128844439-128850840 (-)
A/J	MGP_AJ_G0003811	antisense lncRNA gene	Chr3:124451820-124458221 (-)
AKR/J	MGP_AKRJ_G0003787	antisense lncRNA gene	Chr3:127666087-127672473 (-)
BALB/cJ	MGP_BALBcJ_G0003798	antisense lncRNA gene	Chr3:124314489-124320890 (-)
C3H/HeJ	MGP_C3HHeJ_G0003745	antisense lncRNA gene	Chr3:128049526-128055927 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003940	antisense lncRNA gene	Chr3:133504855-133513457 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003443	antisense lncRNA gene	Chr3:119719078-119725557 (-)
CAST/EiJ	MGP_CASTEiJ_G0003709	antisense lncRNA gene	Chr3:127545128-127552000 (-)
CBA/J	MGP_CBAJ_G0003739	antisense lncRNA gene	Chr3:137977426-137983827 (-)
DBA/2J	MGP_DBA2J_G0003751	antisense lncRNA gene	Chr3:123687116-123694086 (-)
FVB/NJ	MGP_FVBNJ_G0003772	antisense lncRNA gene	Chr3:121254643-121261608 (-)
LP/J	MGP_LPJ_G0003833	antisense lncRNA gene	Chr3:130384989-130391390 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003759	antisense lncRNA gene	Chr3:145971857-145980806 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003941	antisense lncRNA gene	Chr3:127307936-127315011 (-)
PWK/PhJ	MGP_PWKPhJ_G0003665	antisense lncRNA gene	Chr3:123389530-123395926 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003609	antisense lncRNA gene	Chr3:125367973-125374438 (-)
WSB/EiJ	MGP_WSBEiJ_G0003745	antisense lncRNA gene	Chr3:128010520-128016899 (-)

Homology

• Gene Tree
  Gm17225
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17225
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090427 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090427	Ensembl Gene Model | MGI Sequence Detail	176528	C57BL/6J
transcript	ENSMUST00000274489	Ensembl | MGI Sequence Detail	985	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;