Gm17226 Gene Detail

Summary

• Symbol
  Gm17226
• Name
  predicted gene 17226

• Feature Type
  lncRNA gene
• IDs
  MGI:4938053
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:55446833-55448172 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 30.13 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938053	lncRNA gene	Chr9:55446833-55448172 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004630	antisense lncRNA gene	Chr9:54657718-54659057 (-)
A/J	MGP_AJ_G0004611	antisense lncRNA gene	Chr9:52882501-52883840 (-)
AKR/J	MGP_AKRJ_G0004594	antisense lncRNA gene	Chr9:54094924-54096263 (-)
BALB/cJ	MGP_BALBcJ_G0004595	antisense lncRNA gene	Chr9:52660147-52661486 (-)
C3H/HeJ	MGP_C3HHeJ_G0004544	antisense lncRNA gene	Chr9:54559509-54560848 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004745	antisense lncRNA gene	Chr9:56161698-56163037 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004196	antisense lncRNA gene	Chr9:52283614-52284965 (-)
CAST/EiJ	MGP_CASTEiJ_G0004502	antisense lncRNA gene	Chr9:54593994-54595350 (-)
CBA/J	MGP_CBAJ_G0004538	antisense lncRNA gene	Chr9:58127501-58128840 (-)
DBA/2J	MGP_DBA2J_G0004553	antisense lncRNA gene	Chr9:52772067-52773406 (-)
FVB/NJ	MGP_FVBNJ_G0004571	antisense lncRNA gene	Chr9:51975295-51976634 (-)
LP/J	MGP_LPJ_G0004634	antisense lncRNA gene	Chr9:54949114-54950453 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004559	antisense lncRNA gene	Chr9:59620279-59621618 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004744	antisense lncRNA gene	Chr9:54110822-54112161 (-)
PWK/PhJ	MGP_PWKPhJ_G0004455	antisense lncRNA gene	Chr9:52772663-52774017 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004395	antisense lncRNA gene	Chr9:54385531-54386889 (-)
WSB/EiJ	MGP_WSBEiJ_G0004543	antisense lncRNA gene	Chr9:54070904-54072243 (-)

Homology

• Gene Tree
  Gm17226
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000090270 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090270	Ensembl Gene Model | MGI Sequence Detail	1340	C57BL/6J
transcript	ENSMUST00000166637	Ensembl | MGI Sequence Detail	780	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm17226:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89682	Chr9:55448177-55448209 (-)	-21 bp