Gm17227 Gene Detail

Summary

• Symbol
  Gm17227
• Name
  predicted gene 17227

• Feature Type
  lncRNA gene
• IDs
  MGI:4938054
  NCBI Gene: 102639888
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:7275050-7281728 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 5.32 cM

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938054	lncRNA gene	Chr19:7275023-7281893 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003471	antisense lncRNA gene	Chr19:4422191-4429061 (+)
A/J	MGP_AJ_G0003450	antisense lncRNA gene	Chr19:4071280-4078150 (+)
AKR/J	MGP_AKRJ_G0003430	antisense lncRNA gene	Chr19:4201575-4208445 (+)
BALB/cJ	MGP_BALBcJ_G0003439	antisense lncRNA gene	Chr19:4185171-4192037 (+)
C3H/HeJ	MGP_C3HHeJ_G0003388	antisense lncRNA gene	Chr19:4332651-4339372 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003577	antisense lncRNA gene	Chr19:4511836-4518706 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003088	antisense lncRNA gene	Chr19:3976890-3983697 (+)
CAST/EiJ	MGP_CASTEiJ_G0003351	antisense lncRNA gene	Chr19:4235932-4242879 (+)
CBA/J	MGP_CBAJ_G0003385	antisense lncRNA gene	Chr19:4588837-4595703 (+)
DBA/2J	MGP_DBA2J_G0003393	antisense lncRNA gene	Chr19:4037242-4044126 (+)
FVB/NJ	MGP_FVBNJ_G0003411	antisense lncRNA gene	Chr19:4075222-4084913 (+)
LP/J	MGP_LPJ_G0003465	antisense lncRNA gene	Chr19:4272364-4281555 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003399	antisense lncRNA gene	Chr19:4479016-4485874 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003580	antisense lncRNA gene	Chr19:4349023-4355893 (+)
PWK/PhJ	MGP_PWKPhJ_G0003307	antisense lncRNA gene	Chr19:4087250-4094460 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003252	antisense lncRNA gene	Chr19:4151608-4158543 (+)
WSB/EiJ	MGP_WSBEiJ_G0003385	antisense lncRNA gene	Chr19:4249522-4256397 (+)

Homology

• Gene Tree
  Gm17227
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000091558 (Evidence)
• NCBI Gene
  102639888

Representative Sequences			Length	Strain/Species
genomic	102639888	NCBI Gene Model | MGI Sequence Detail	6679	C57BL/6J
transcript	NR_167747	RefSeq | MGI Sequence Detail	824	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm17227:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154747	Chr19:7275039-7275058 (+)	-1 bp
Tssr154748	Chr19:7275075-7275087 (+)	31 bp
Tssr154749	Chr19:7275089-7275098 (+)	44 bp