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Mir3960 Gene Detail
Summary
  • Symbol
    Mir3960
  • Name
    microRNA 3960
  • Synonyms
    mmu-mir-3960
Location &
Maps
more
  • Sequence Map
    Chr2:32602912-32602984 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 22.09 cM
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4950394
 miRNA gene Chr2:32602912-32602984 (-)
129S1/SvImJ MGP_129S1SvImJ_G0008537
 miRNA gene Chr2:31199498-31199570 (-)
A/J MGP_AJ_G0008525
 miRNA gene Chr2:29865761-29865833 (-)
AKR/J MGP_AKRJ_G0008510
 miRNA gene Chr2:30938288-30938360 (-)
BALB/cJ MGP_BALBcJ_G0008514
 miRNA gene Chr2:29986602-29986674 (-)
C3H/HeJ MGP_C3HHeJ_G0008453
 miRNA gene Chr2:30820870-30820942 (-)
C57BL/6NJ MGP_C57BL6NJ_G0008721
 miRNA gene Chr2:32137534-32137606 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0007709
 miRNA gene Chr2:28586725-28586797 (-)
CAST/EiJ MGP_CASTEiJ_G0008312
 miRNA gene Chr2:30769722-30769794 (-)
CBA/J MGP_CBAJ_G0008418
 miRNA gene Chr2:33367859-33367931 (-)
DBA/2J MGP_DBA2J_G0008456
 miRNA gene Chr2:29631141-29631213 (-)
FVB/NJ MGP_FVBNJ_G0008474
 miRNA gene Chr2:29517592-29517664 (-)
LP/J MGP_LPJ_G0008544
 miRNA gene Chr2:31070519-31070591 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0008436
 miRNA gene Chr2:32989860-32989932 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0008709
 miRNA gene Chr2:30808004-30808076 (-)
PWK/PhJ MGP_PWKPhJ_G0008239
 miRNA gene Chr2:29536768-29536840 (-)
SPRET/EiJ MGP_SPRETEiJ_G0008098
 miRNA gene Chr2:30965259-30965331 (-)
WSB/EiJ MGP_WSBEiJ_G0008398
 miRNA gene Chr2:30989350-30989422 (-)



Homology
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    6
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
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  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100628606 NCBI Gene Model | MGI Sequence Detail 73 C57BL/6J ±  kb
transcript NR_039536 RefSeq | MGI Sequence Detail 73 ZRU/MplStud  
For the selected sequence
Other Database
Links
less
miRBase MI0016963
References
more
  • Summaries
    All 5
    Gene Ontology 1
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:171138 Hu R, et al., A Runx2/miR-3960/miR-2861 Regulatory Feedback Loop during Mouse Osteoblast Differentiation. J Biol Chem. 2011 Apr 8;286(14):12328-39
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory